View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12419_low_51 (Length: 229)
Name: NF12419_low_51
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12419_low_51 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 1274829 - 1275046
Alignment:
| Q |
1 |
gtttcaactaccaagtatacagcatttaattttataccaaagtctttgtttgaacaattcagaagagttgcaaatatctactttcttgttgttgcttgtg |
100 |
Q |
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| T |
1274829 |
gtttcaactaccaagtatacagcatttaattttatacctaagtctttgtttgaacaattcagaagagttgcaaatatctactttcttgttgttgcttgtg |
1274928 |
T |
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| Q |
101 |
tttcttttagtcctttagcaccttatacagctttaagtattgctgcacctttggtggctgttattggtgctactatggctaaagaagctgtggaagattg |
200 |
Q |
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| T |
1274929 |
tttcttttagtcctttagcaccttatacagctttaagtattgctgcacctttggtggctgttattggtgctactatggctaaagaagctgtggaagattg |
1275028 |
T |
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| Q |
201 |
gagaaggagaacacaggt |
218 |
Q |
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|||||||||||||||||| |
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| T |
1275029 |
gagaaggagaacacaggt |
1275046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 46054051 - 46054010
Alignment:
| Q |
30 |
ttttataccaaagtctttgtttgaacaattcagaagagttgc |
71 |
Q |
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|||| |||| |||||||||||||||||||||||||| ||||| |
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| T |
46054051 |
ttttctacctaagtctttgtttgaacaattcagaagggttgc |
46054010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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