View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12419_low_54 (Length: 220)
Name: NF12419_low_54
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12419_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 2829497 - 2829314
Alignment:
| Q |
18 |
tgtggagctggagaacaaagtggaggaatttaatcagaatgttactttacacgaggtaaactaacgctataactatttgcaaaagcatttttgttccacg |
117 |
Q |
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| T |
2829497 |
tgtggagctggagaacaaagtggaggaatttaatcagaatgttactttacacgaggtaaactaacgctataactatttgcaaaagcatttttgttccaca |
2829398 |
T |
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| Q |
118 |
aaacctgaattagaaactttgtcttgcttagttcaaactttcattgttgaaatgtggattgataatgaagcaattgaattacat |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2829397 |
aaacctgaattagaaactttgtcttgcttagttcaaactttcattgttgaaatgtggattgataatgaagcaattgaattacat |
2829314 |
T |
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