View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12419_low_61 (Length: 203)

Name: NF12419_low_61
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12419_low_61
NF12419_low_61
[»] chr1 (1 HSPs)
chr1 (11-183)||(35141470-35141642)
[»] chr3 (17 HSPs)
chr3 (19-179)||(6141050-6141210)
chr3 (19-183)||(13271654-13271818)
chr3 (19-179)||(6167655-6167815)
chr3 (19-183)||(6257966-6258130)
chr3 (22-182)||(7748769-7748929)
chr3 (36-183)||(6264466-6264613)
chr3 (34-179)||(6244072-6244217)
chr3 (19-179)||(6898852-6899012)
chr3 (19-156)||(6236489-6236626)
chr3 (19-182)||(6723181-6723344)
chr3 (19-178)||(6881280-6881439)
chr3 (19-120)||(6592517-6592618)
chr3 (19-128)||(6915865-6915974)
chr3 (19-121)||(6850443-6850545)
chr3 (19-113)||(5279423-5279517)
chr3 (19-79)||(6528093-6528153)
chr3 (19-79)||(6555659-6555719)


Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 11 - 183
Target Start/End: Complemental strand, 35141642 - 35141470
Alignment:
Q  11 gaacctgtgatactaaattgggtaaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatt 110  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35141642 gaaccagtgatactaaattgggtaaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatt 35141543  T
Q  111 tggctgaagagactccaacactgagacacatgcttctgttactgagccatcgatttctctccattcatcatac 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35141542 tggctgaagagactccaacactgagacacatgcttctgttactgagccatcgatttctctccattcatcatac 35141470  T

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Target: chr3 (Bit Score: 129; Significance: 6e-67; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 6141050 - 6141210
Alignment:
Q  19 gatactaaattgggtaaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggctgaa 118  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6141050 gatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggttgaa 6141149  T
Q  119 gagactccaacactgagacacatgcttctgttactgagccatcgatttctctccattcatc 179  Q
    ||| |||||| || ||||||| ||||||||||||||||||||| |||||||||||||||||    
T  6141150 gagcctccaagaccgagacacgtgcttctgttactgagccatccatttctctccattcatc 6141210  T

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Target: chr3; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 13271818 - 13271654
Alignment:
Q  19 gatactaaattgggtaaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggctgaa 118  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||    
T  13271818 gatactaaattgggtagatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagtctcatgaggtgtctatttggttgaa 13271719  T
Q  119 gagactccaacactgagacacatgcttctgttactgagccatcgatttctctccattcatcatac 183  Q
    |||  ||||| || ||||||| |||||| |||||| ||||||| |||||||||||||||||||||    
T  13271718 gagcttccaagaccgagacacgtgcttcagttactaagccatccatttctctccattcatcatac 13271654  T

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Target: chr3; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 6167655 - 6167815
Alignment:
Q  19 gatactaaattgggtaaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggctgaa 118  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  6167655 gatactaaattgggtagatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgagatttctatttggttgaa 6167754  T
Q  119 gagactccaacactgagacacatgcttctgttactgagccatcgatttctctccattcatc 179  Q
    ||| |||||| ||  ||| || |||||| ||| ||||||| || |||||||||||||||||    
T  6167755 gagcctccaagaccaagagacgtgcttcagtttctgagccttccatttctctccattcatc 6167815  T

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Target: chr3; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 6257966 - 6258130
Alignment:
Q  19 gatactaaattgggtaaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggctgaa 118  Q
    ||||||||||| |||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  6257966 gatactaaatttggtagattaagatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattaggttgaa 6258065  T
Q  119 gagactccaacactgagacacatgcttctgttactgagccatcgatttctctccattcatcatac 183  Q
    ||| |||||| || || |||| |||||| ||| |||||||||| |||||||||||||||||||||    
T  6258066 gagcctccaagaccgatacacgtgcttcagtttctgagccatccatttctctccattcatcatac 6258130  T

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Target: chr3; HSP #5
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 7748769 - 7748929
Alignment:
Q  22 actaaattgggtaaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggctgaagag 121  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| || ||||    
T  7748769 actaaattgggtaaatgataatcgccaagccaatttggaaagctactgcctctgtagtctttgatggttagcctcatgaggtttctatttggttggagag 7748868  T
Q  122 actccaacactgagacacatgcttctgttactgagccatcgatttctctccattcatcata 182  Q
     ||| || || ||||||  |||||| |||||||| ||||| ||||||||||||||||||||    
T  7748869 cctctaagacagagacatgtgcttcagttactgatccatccatttctctccattcatcata 7748929  T

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Target: chr3; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 36 - 183
Target Start/End: Original strand, 6264466 - 6264613
Alignment:
Q  36 atgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggctgaagagactccaacactgag 135  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||| |||||||||||  | |||| |||||| || |||    
T  6264466 atgatgatccccaagccaattaggaaagctactacctctgtagtcattgatgctgagcctcgtgagatttctatttggtcgcagagcctccaagaccgag 6264565  T
Q  136 acacatgcttctgttactgagccatcgatttctctccattcatcatac 183  Q
    | ||||||||| |||||||||||||| |||||||||||||||||||||    
T  6264566 aaacatgcttcagttactgagccatccatttctctccattcatcatac 6264613  T

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Target: chr3; HSP #7
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 34 - 179
Target Start/End: Original strand, 6244072 - 6244217
Alignment:
Q  34 aaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggctgaagagactccaacactg 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| |||||| |  |    
T  6244072 aaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcacgaggttactatttggttgaagagcctccaagatag 6244171  T
Q  134 agacacatgcttctgttactgagccatcgatttctctccattcatc 179  Q
    |||||  |||||| ||| ||||| |||| |||||||||||||||||    
T  6244172 agacatgtgcttcagtttctgagtcatctatttctctccattcatc 6244217  T

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Target: chr3; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 6898852 - 6899012
Alignment:
Q  19 gatactaaattgggtaaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggctgaa 118  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||| ||||||| ||||    
T  6898852 gatactaaattgggtaaatgatgaaccccaagccaatttggaaatctactgcctctgtagtctttgatggttagcctcatgaggtttatatttggttgaa 6898951  T
Q  119 gagactccaacactgagacacatgcttctgttactgagccatcgatttctctccattcatc 179  Q
    ||| ||| || || ||||||| |||||  |||||||| ||||| |||| | |||| |||||    
T  6898952 gagcctctaagacagagacacgtgctttagttactgatccatccatttttatccaatcatc 6899012  T

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Target: chr3; HSP #9
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 6236489 - 6236626
Alignment:
Q  19 gatactaaattgggtaaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggctgaa 118  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||| |||||||||||  |||    
T  6236489 gatactaaattgggtagatgatgatccccaagccaattaggaaagctactacctctgtagtcattgatgccgagcctcatgagatttctatttggtcgaa 6236588  T
Q  119 gagactccaacactgagacacatgcttctgttactgag 156  Q
    ||| |||||| |  ||||||| |||||  |||||||||    
T  6236589 gagcctccaagatcgagacacgtgctttagttactgag 6236626  T

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Target: chr3; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 6723344 - 6723181
Alignment:
Q  19 gatactaaattgggtaaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggctgaa 118  Q
    ||||||||||||||||||||| ||| ||||| |||||||||||||||||| ||||  ||||| |||||||||||||||||||||||| ||||||| ||||    
T  6723344 gatactaaattgggtaaatgacgatacccaacccaatttggaaagctactgcctccatagtctttgatggtgagcctcatgaggtttttatttggttgaa 6723245  T
Q  119 gagactccaacactgagacacatgcttctgttactgagccatcgatttctctccattcatcata 182  Q
    ||| |||||| || ||||||  |||||  |||||||| ||||  |||| ||||||| |||||||    
T  6723244 gagcctccaagacagagacatctgctttagttactgatccattcatttttctccatccatcata 6723181  T

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Target: chr3; HSP #11
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 6881280 - 6881439
Alignment:
Q  19 gatactaaattgggtaaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggctgaa 118  Q
    ||||||||||| ||||||||| ||||||||||||| |||||||||||||  ||||||||||| |||||||| || ||| |||||||| ||||||| ||||    
T  6881280 gatactaaatttggtaaatgacgatccccaagccagtttggaaagctaccgcctctgtagtctttgatggttagactcgtgaggtttatatttggttgaa 6881379  T
Q  119 gagactccaacactgagacacatgcttctgttactgagccatcgatttctctccattcat 178  Q
    ||| |||||| || ||| |   |||||| |||||||| ||||| ||||||||||||||||    
T  6881380 gagcctccaagacagaggcttgtgcttcagttactgatccatccatttctctccattcat 6881439  T

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Target: chr3; HSP #12
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 6592618 - 6592517
Alignment:
Q  19 gatactaaattgggtaaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggctgaa 118  Q
    |||||||| |||||||||| | |||| |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  6592618 gatactaacttgggtaaataaagatcgccaagccaatttggaaagcttctgcctctgtagtctttgatggtgagcctcatgaggtttctatttggttgaa 6592519  T
Q  119 ga 120  Q
    ||    
T  6592518 ga 6592517  T

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Target: chr3; HSP #13
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 6915865 - 6915974
Alignment:
Q  19 gatactaaattgggtaaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggctgaa 118  Q
    ||||||||||| |||||||||| ||| |||||||||| |||||||||||| ||||  ||||| |||||||||||||||||||| ||||||||||| ||||    
T  6915865 gatactaaatttggtaaatgataatctccaagccaatatggaaagctactgcctccatagtctttgatggtgagcctcatgagatttctatttggttgaa 6915964  T
Q  119 gagactccaa 128  Q
    ||| ||||||    
T  6915965 gagcctccaa 6915974  T

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Target: chr3; HSP #14
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 6850545 - 6850443
Alignment:
Q  19 gatactaaattgggtaaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggctgaa 118  Q
    |||||||||||||||||||||| |||||| ||||||| ||| |||||||| |||| |||||| |||||||| |||||||||||||||| |||||| ||||    
T  6850545 gatactaaattgggtaaatgataatccccgagccaatatgggaagctactgcctcggtagtctttgatggttagcctcatgaggtttccatttggttgaa 6850446  T
Q  119 gag 121  Q
    |||    
T  6850445 gag 6850443  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 5279423 - 5279517
Alignment:
Q  19 gatactaaattgggtaaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttgg 113  Q
    |||||||||||| |||||| |   ||||||||||||| |||||||| | | ||||||||||| | |||| |||| ||  ||||||| ||||||||    
T  5279423 gatactaaattgagtaaataacagtccccaagccaatgtggaaagccagtgcctctgtagtcctcgatgatgagactattgaggttgctatttgg 5279517  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 6528153 - 6528093
Alignment:
Q  19 gatactaaattgggtaaatgatgatccccaagccaatttggaaagctactacctctgtagt 79  Q
    |||||||| ||||||||||||  | |||  |||||||||||||| ||||||||| ||||||    
T  6528153 gatactaagttgggtaaatgactaccccttagccaatttggaaatctactacctttgtagt 6528093  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 6555719 - 6555659
Alignment:
Q  19 gatactaaattgggtaaatgatgatccccaagccaatttggaaagctactacctctgtagt 79  Q
    |||||||| ||||||||||||  | |||  |||||||||||||| ||||||||| ||||||    
T  6555719 gatactaagttgggtaaatgacaaccccttagccaatttggaaatctactacctttgtagt 6555659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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