View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12419_low_7 (Length: 623)
Name: NF12419_low_7
Description: NF12419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12419_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 179 - 611
Target Start/End: Original strand, 45059238 - 45059670
Alignment:
| Q |
179 |
cagaagagttcagctgggnnnnnnncacatatttctggtataatgaggttggattcacttggtaatgaatttggttgttctgttttaccaccacttactg |
278 |
Q |
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| T |
45059238 |
cagaagagttcagctgggaaaaaaacacatatttctggtataatgaggttggattcacttggtaatgaatttggttgttctgttttaccaccacttactg |
45059337 |
T |
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| Q |
279 |
atacgtcgaattcaattgggaaaatcaaacaattgaatgattcagcttacgtgtcctgcttctccaactcaattgatgttcaaagaaaccaaggagggat |
378 |
Q |
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| T |
45059338 |
attcgtcgaattcaattgggaaaatcaaacaattgaatgattcagcttacgtgtcctgcttctccaactcaattgatgttcaaagaaaccaaggagggat |
45059437 |
T |
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| Q |
379 |
ctttgattcattcaacaactcaatttatggtgtttcttcacataatcaactagattttttcccaagaatctcatcttctaatggttcattatactctaat |
478 |
Q |
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| T |
45059438 |
ctttgattcattcaacaactcaatttatggtatttcttcacataatcaactagattttttcccaagaatctcatcttctaatggttcattatactctaat |
45059537 |
T |
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| Q |
479 |
aatcaagctgcggttaatttgcaatatccaagttctgtttgtggtatgcaagatcaagcaattttaagagctttgtatgaaaacaatggtttcaagactg |
578 |
Q |
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| T |
45059538 |
aatcaagctgcggttaatttgcaatatccaagttctgtttgtggtatgcaagatcaagcaattttaagagctttgtatgaaaacaatggtttcaagactg |
45059637 |
T |
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| Q |
579 |
agagacagcaacaaattatgagtgtgtcacagg |
611 |
Q |
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| T |
45059638 |
agagacagcaacaaattatgagtgtgtcacagg |
45059670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 45059079 - 45059173
Alignment:
| Q |
20 |
gacttgagggtaaattctctgttcacaatcttccaaaagctgcaaaggtattcttctataaactttcttatctgtttttcttattgtacttaacc |
114 |
Q |
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| T |
45059079 |
gacttgagggtaaattctctgttcacaatcttccaaaagctgcaaaggtattcttctataaactttcttctctgtttttcttattgtacttaacc |
45059173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 554 - 595
Target Start/End: Original strand, 35363242 - 35363283
Alignment:
| Q |
554 |
tatgaaaacaatggtttcaagactgagagacagcaacaaatt |
595 |
Q |
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| T |
35363242 |
tatgaaaacaatggtttcaaaactgagagataacaacaaatt |
35363283 |
T |
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