View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1241R-Insertion-1 (Length: 886)
Name: NF1241R-Insertion-1
Description: NF1241R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1241R-Insertion-1 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 546; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 277 - 886
Target Start/End: Complemental strand, 10728445 - 10727839
Alignment:
| Q |
277 |
tagcactgctcttatgagctaaataagttgatttcagtctccataattcccataacaattacccaccgtattccgacacggataaaccttgctaggagga |
376 |
Q |
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| T |
10728445 |
tagcactgctcttatgagctaaataagttgatttcagtctccataatccccataacaattactcaccgtattccgacacggataaaccttgctaggagga |
10728346 |
T |
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| Q |
377 |
atgtccttccgattaatgcctctcgaatttgtgtgttgtgtgatacggaggaggaaacagatggacatttattcatgcattgcattgtggcgcgtaatgt |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10728345 |
atgtccttccgattaatgcctctcgaatttgtgtgttgtgtgatacggaggaggaaacagatggacatttattcatgcattgcattgtggtgcgtaatgt |
10728246 |
T |
|
| Q |
477 |
gtggttagggttactattatggttacaaggggagatgataatgctgccaaatttgtttaaccattgggaatgttggaaacttggaatagtatgtcgaaga |
576 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
10728245 |
gtggttagggttactattatggttacaaggggagatgataatgctgccaaatttgtttaaccattgggaatgttggaaacatggaatagtatgtcgagga |
10728146 |
T |
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| Q |
577 |
acaaaaaggaaacaaaggggatgagtctcatttggcattcaacgatttgggttttatggaaagctagaaacaatttcattttcaacaatggagtgatttc |
676 |
Q |
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| T |
10728145 |
acaaaaaggaaacaaaggggatgagtctcatttagcattcaacgatttgggtcttatggaaagctagaaacaatttcattttcaacaatggagtgatttc |
10728046 |
T |
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| Q |
677 |
gatgccggagctagtggatgaagtaaaagtgttgccgtggaggtgggggttaactcggctaacaattccgacatgtttgttttatgaatgatgttggaac |
776 |
Q |
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| T |
10728045 |
gatgccggagctagtggatgaagtaaaagtgttgtcgtggaggtgggggttaactcggctaacaattccgacatgtttgttttatgaatgatgttggaa- |
10727947 |
T |
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| Q |
777 |
cccaagagattgccttttgtagttcttggagtggggctggtataatgtgcacaggtgcttactggtgttttctgtcttctggtgtgaagggtcggctact |
876 |
Q |
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| T |
10727946 |
cccaagagattgcc-tttgtagttctt-gagtggggctggtataatgtgcacaggtgcttactggtgttttctgtcttctggtgtgagggttcggctact |
10727849 |
T |
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| Q |
877 |
gtttgtgcag |
886 |
Q |
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|||||||||| |
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| T |
10727848 |
gtttgtgcag |
10727839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 10729245 - 10729091
Alignment:
| Q |
9 |
aacccgaggtttgcattttcgtcatcatcgttgtcgttgttttcgattttcatgcatgcatgcgtgtgttttttcttgtgttgttatgttcatcacttgt |
108 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10729245 |
aacccgaggtttgcattttcgtcatcatcgttgttgttgtttttgattttcatgcatgcatgcgtgtgttttttcttgtgttgttatgttcatcacttgt |
10729146 |
T |
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| Q |
109 |
tcccctttaatatcatatcaaaagggtgtttcataatgtatcatatcgtatcaaa |
163 |
Q |
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| T |
10729145 |
tcccctttaatatcatatcaaaagggtgtttcataatgtaccatatcatatcaaa |
10729091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 10728574 - 10728509
Alignment:
| Q |
168 |
ttgagtgttcatcatgatttttgctataagcatcaaataagttgtttatccaaattgggtcttaat |
233 |
Q |
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| T |
10728574 |
ttgagtgttcatcatgatttttgctataagcatcaaataagttgtttatccaaattgggtcttaat |
10728509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 5e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 371 - 663
Target Start/End: Complemental strand, 8324677 - 8324402
Alignment:
| Q |
371 |
ggaggaatgtccttccgattaatgcctctcgaatttgtgtgttgtgtgatacggaggaggaaacagatggacatttattcatgcattgcattgtggcgcg |
470 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||||||||| | ||| |||||| ||| ||||| ||||||||||||||| |
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| T |
8324677 |
ggaggaatgtccttccgattaatgcctcttgaaattgtgtgttgtgtgatgcagagaaggaaatggatagacatctattcatgcattgca---------- |
8324588 |
T |
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| Q |
471 |
taatgtgtggttagggttactattatggttacaaggggagatgataatgctgccaaatttgtttaaccattgggaatgttggaaacttggaatagtatgt |
570 |
Q |
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| T |
8324587 |
--atgtgtggttgagggtgctatattggttacaaggggagatgataatgc-gccaaatttgttcaacctttgtaagtaagtg----ttggaatagtatgt |
8324495 |
T |
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| Q |
571 |
cgaagaacaaaaaggaaacaaaggggatgagtctcatttggcattcaacgatttgggttttatggaaagctagaaacaatttcattttcaaca |
663 |
Q |
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| T |
8324494 |
cgaggagtaaaaaggaaacaaaggggatgagactcatttgacattcaacgatttgggtcatatggaaagttagaaacaattgcattttcaaca |
8324402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 606 - 643
Target Start/End: Original strand, 47820179 - 47820216
Alignment:
| Q |
606 |
atttggcattcaacgatttgggttttatggaaagctag |
643 |
Q |
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| T |
47820179 |
atttggcatgcgacgatttgggttttatggaaagctag |
47820216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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