View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1241R-Insertion-3 (Length: 271)

Name: NF1241R-Insertion-3
Description: NF1241R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1241R-Insertion-3
NF1241R-Insertion-3
[»] chr3 (12 HSPs)
chr3 (7-271)||(5299411-5299675)
chr3 (30-269)||(5250872-5251111)
chr3 (13-251)||(5268742-5268980)
chr3 (30-142)||(4388151-4388263)
chr3 (183-270)||(8455513-8455600)
chr3 (183-270)||(6736849-6736936)
chr3 (183-270)||(8590588-8590675)
chr3 (183-269)||(6519246-6519332)
chr3 (183-270)||(6553521-6553608)
chr3 (181-259)||(5281508-5281586)
chr3 (184-270)||(6479065-6479151)
chr3 (183-248)||(6948128-6948193)
[»] scaffold0425 (1 HSPs)
scaffold0425 (183-270)||(6560-6647)


Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 5299411 - 5299675
Alignment:
Q  7 caaatttcttgttttaaccctaacatatccttttgctttgctagaaattctaacttctctagcaattctttgatcctagactcaaagggatcagtaaacg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5299411 caaatttcttgttttaaccctaacatatccttttgctttgctagaaattctaacttctctagcaattctttgatcctagactcaaagggatcagtacacg 5299510  T
Q  107 atgaaaagaagtcgaataccttgctagtagaaggttgagaatcaactttcagcttcttgtttggtgtgtaggttgcaatctcatccaaaagttgatctgc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5299511 atgaaaagaagtcgaataccttgctagtagaaggttgagaatcaactttcagcttcttgtttggtgtgtaggttgcaatctcatccaaaagttgatctgc 5299610  T
Q  207 ttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttg 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5299611 ttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttg 5299675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 30 - 269
Target Start/End: Original strand, 5250872 - 5251111
Alignment:
Q  30 catatccttttgctttgctagaaattctaacttctctagcaattctttgatcctagactcaaagggatcagtaaacgatgaaaagaagtcgaataccttg 129  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||| |||||||| ||||| |||| ||| || ||||||||||||||||||||||||    
T  5250872 catatccttttgctttgcaagaaattctagcttctctagcaattctttaatcctagattcaaatggattagtgaaagatgaaaagaagtcgaataccttg 5250971  T
Q  130 ctagtagaaggttgagaatcaactttcagcttcttgtttggtgtgtaggttgcaatctcatccaaaagttgatctgcttcatacacaacatgtttaagat 229  Q
    ||||||||||||||||| ||| |||||||||||||   |||||  |  |||||||||||||| || || || ||  | |||||  ||  |||||||||||    
T  5250972 ctagtagaaggttgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagat 5251071  T
Q  230 caccaagccacttcttcacgtatgagctttggtattgctt 269  Q
    || |||||||||||||||||||   |||||||||||||||    
T  5251072 catcaagccacttcttcacgtacatgctttggtattgctt 5251111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 5268742 - 5268980
Alignment:
Q  13 tcttgttttaaccctaacatatccttttgctttgctagaaattctaacttctctagcaattctttgatcctagactcaaagggatcagtaaacgatgaaa 112  Q
    ||||||||||| || | ||||| |||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| |||| ||| || || ||||    
T  5268742 tcttgttttaatccaagcatatgcttttgttttgcaagaaattctagcttctctagcaattctttgatcctagactcaaatggattagtgaaagacgaaa 5268841  T
Q  113 agaagtcgaataccttgctagtagaaggttgagaatcaactttcagcttcttgtttggtgtgtaggttgcaatctcatccaaaagttgatctgcttcata 212  Q
     ||||||||||||||||||||||||||||||||| |||| |||| |||||||   |||||| |  |||||||||||||| || || || ||  | |||||    
T  5268842 tgaagtcgaataccttgctagtagaaggttgagattcaagtttctgcttcttcaatggtgtatcagttgcaatctcatctaacagctggtcaacctcata 5268941  T
Q  213 cacaacatgtttaagatcaccaagccacttcttcacgta 251  Q
      ||  ||||||||||||| |||||||||||||||||||    
T  5268942 tgcataatgtttaagatcatcaagccacttcttcacgta 5268980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 30 - 142
Target Start/End: Complemental strand, 4388263 - 4388151
Alignment:
Q  30 catatccttttgctttgctagaaattctaacttctctagcaattctttgatcctagactcaaagggatcagtaaacgatgaaaagaagtcgaataccttg 129  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||| | | || ||||||||||||| ||||||||||    
T  4388263 catatccttttgcttcgcaagaaattctaacttctctagcaattctttgatcctagattcaaatggattaatgaaagatgaaaagaagttgaataccttg 4388164  T
Q  130 ctagtagaaggtt 142  Q
    |||||||||||||    
T  4388163 ctagtagaaggtt 4388151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 270
Target Start/End: Original strand, 8455513 - 8455600
Alignment:
Q  183 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgcttt 270  Q
    ||||||||| || ||||| ||||||||||| |||||||||||||||||| |||||||||||||||| |||  | ||||||| ||||||    
T  8455513 aatctcatctaatagttggtctgcttcataaacaacatgtttaagatcatcaagccacttcttcacatatttgttttggtactgcttt 8455600  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 270
Target Start/End: Original strand, 6736849 - 6736936
Alignment:
Q  183 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgcttt 270  Q
    |||||||||||| ||||| ||||||||||| | |||||||||||| ||| |||||||||||||||| |||  | ||||||| ||||||    
T  6736849 aatctcatccaatagttggtctgcttcataaagaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgcttt 6736936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 270
Target Start/End: Original strand, 8590588 - 8590675
Alignment:
Q  183 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgcttt 270  Q
    ||||||||| || ||||| ||||||||||| |||||||||||||| ||| |||||||||||||||| |||  |||| |||| ||||||    
T  8590588 aatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatttgcttcggtactgcttt 8590675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 269
Target Start/End: Complemental strand, 6519332 - 6519246
Alignment:
Q  183 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctt 269  Q
    ||||||||| || ||||| ||||||||||| |||||||||||||| ||| |||||||||||||||| |||  | ||||||| |||||    
T  6519332 aatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgctt 6519246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 6553608 - 6553521
Alignment:
Q  183 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgcttt 270  Q
    ||||||||| || ||||| ||||| ||||| |||||||||||||| ||| |||||||||||||||| |||  | ||||||| ||||||    
T  6553608 aatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgcttt 6553521  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 5281508 - 5281586
Alignment:
Q  181 gcaatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagcttt 259  Q
    ||||||||||| |||| ||| ||||| ||||| ||| |||||||||||||| ||||||||||||| || |||| |||||    
T  5281508 gcaatctcatcgaaaatttggtctgcctcatatacagcatgtttaagatcatcaagccacttctttacatatgtgcttt 5281586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 270
Target Start/End: Complemental strand, 6479151 - 6479065
Alignment:
Q  184 atctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgcttt 270  Q
    |||||||| || ||||| ||||||||||| |||||||||||||| | | |||||||||||||||| |||  | ||||||| ||||||    
T  6479151 atctcatctaatagttggtctgcttcataaacaacatgtttaagtttatcaagccacttcttcacatatatgatttggtactgcttt 6479065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 6948128 - 6948193
Alignment:
Q  183 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcac 248  Q
    ||||||||| || ||||| ||||| ||||| |||||||||||||| ||| ||||||||||||||||    
T  6948128 aatctcatctaacagttggtctgcctcatagacaacatgtttaagttcatcaagccacttcttcac 6948193  T

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Target: scaffold0425 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 6647 - 6560
Alignment:
Q  183 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgcttt 270  Q
    ||||||||| || ||||| ||||| ||||| |||||||||||||| ||| |||||||||||||||| |||  | ||||||| ||||||    
T  6647 aatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgcttt 6560  T

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