View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1241R-Insertion-4 (Length: 92)

Name: NF1241R-Insertion-4
Description: NF1241R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1241R-Insertion-4
NF1241R-Insertion-4
[»] chr8 (2 HSPs)
chr8 (11-92)||(11023973-11024054)
chr8 (12-90)||(43736702-43736780)
[»] chr4 (5 HSPs)
chr4 (12-90)||(37495086-37495164)
chr4 (12-90)||(22502925-22503003)
chr4 (12-90)||(46594032-46594110)
chr4 (12-90)||(50962445-50962523)
chr4 (59-90)||(26550216-26550247)
[»] chr3 (1 HSPs)
chr3 (12-90)||(12932903-12932981)
[»] chr7 (4 HSPs)
chr7 (12-90)||(22120114-22120192)
chr7 (12-90)||(40542807-40542885)
chr7 (12-86)||(44263622-44263696)
chr7 (12-89)||(42357570-42357647)
[»] chr5 (1 HSPs)
chr5 (12-90)||(21201-21279)
[»] chr2 (2 HSPs)
chr2 (12-90)||(34768574-34768652)
chr2 (12-90)||(38506018-38506096)


Alignment Details
Target: chr8 (Bit Score: 74; Significance: 2e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 11023973 - 11024054
Alignment:
Q  11 ttattagtgtgacctctatcacttcaaacaagttcttttccaaatgttcttttgatgtgcttaagaattcaaacaactgcgt 92  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11023973 ttattagtgtggcctctatcacttcaaacaagttcttttccaaatgttcttttgatgtgcttaagcattcaaacaactgcgt 11024054  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 43736780 - 43736702
Alignment:
Q  12 tattagtgtgacctctatcacttcaaacaagttcttttccaaatgttcttttgatgtgcttaagaattcaaacaactgc 90  Q
    |||||||||| ||||||||| |  |||||||| ||||||||  || ||||||||||| ||||||||||| |||||||||    
T  43736780 tattagtgtggcctctatcagtgaaaacaagtccttttccagttgctcttttgatgtacttaagaattcgaacaactgc 43736702  T

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Target: chr4 (Bit Score: 43; Significance: 5e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 5e-16
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 37495164 - 37495086
Alignment:
Q  12 tattagtgtgacctctatcacttcaaacaagttcttttccaaatgttcttttgatgtgcttaagaattcaaacaactgc 90  Q
    |||||||||| ||||||||| |  |||||||| ||||||||  || ||||||||||| |||||||||||||||||||||    
T  37495164 tattagtgtggcctctatcagtgaaaacaagtccttttccaggtgctcttttgatgtacttaagaattcaaacaactgc 37495086  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 22502925 - 22503003
Alignment:
Q  12 tattagtgtgacctctatcacttcaaacaagttcttttccaaatgttcttttgatgtgcttaagaattcaaacaactgc 90  Q
    |||||||||| ||||||||| |  |||||||| ||||||||  || ||||||||||| ||||||||||| |||||||||    
T  22502925 tattagtgtggcctctatcagtgaaaacaagtccttttccaggtgctcttttgatgtacttaagaattcgaacaactgc 22503003  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 46594032 - 46594110
Alignment:
Q  12 tattagtgtgacctctatcacttcaaacaagttcttttccaaatgttcttttgatgtgcttaagaattcaaacaactgc 90  Q
    |||||||||| ||||||| | |  |||||||| | |||||| ||| ||||||||||| ||||||||||| |||||||||    
T  46594032 tattagtgtggcctctataagtgaaaacaagtccatttccagatgctcttttgatgtacttaagaattcgaacaactgc 46594110  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 50962523 - 50962445
Alignment:
Q  12 tattagtgtgacctctatcacttcaaacaagttcttttccaaatgttcttttgatgtgcttaagaattcaaacaactgc 90  Q
    |||||||||| ||||||||| |  |||||||| ||||||||  || |||||| |||| ||||||||||| |||||||||    
T  50962523 tattagtgtggcctctatcagtgaaaacaagtccttttccaggtgctcttttaatgtacttaagaattcgaacaactgc 50962445  T

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Target: chr4; HSP #5
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 90
Target Start/End: Complemental strand, 26550247 - 26550216
Alignment:
Q  59 cttttgatgtgcttaagaattcaaacaactgc 90  Q
    |||||||||| |||||||||||||||||||||    
T  26550247 cttttgatgtacttaagaattcaaacaactgc 26550216  T

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Target: chr3 (Bit Score: 43; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 5e-16
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 12932903 - 12932981
Alignment:
Q  12 tattagtgtgacctctatcacttcaaacaagttcttttccaaatgttcttttgatgtgcttaagaattcaaacaactgc 90  Q
    |||||||||| ||||||| | |  |||||||| |||||||| ||| ||||||||||| |||||||||||||||||||||    
T  12932903 tattagtgtggcctctattagtgaaaacaagtccttttccagatgctcttttgatgtacttaagaattcaaacaactgc 12932981  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 22120192 - 22120114
Alignment:
Q  12 tattagtgtgacctctatcacttcaaacaagttcttttccaaatgttcttttgatgtgcttaagaattcaaacaactgc 90  Q
    |||||||||| |||||||||||  |||||||| |||||||   || ||||||||||| ||||||||||| |||||||||    
T  22120192 tattagtgtggcctctatcactgaaaacaagtccttttccgggtgctcttttgatgtacttaagaattcgaacaactgc 22120114  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 40542807 - 40542885
Alignment:
Q  12 tattagtgtgacctctatcacttcaaacaagttcttttccaaatgttcttttgatgtgcttaagaattcaaacaactgc 90  Q
    |||||||||| |||||||||||  |||||||| |||||||   || ||||||||||| ||||||||||| |||||||||    
T  40542807 tattagtgtggcctctatcactgaaaacaagtccttttccgggtgctcttttgatgtacttaagaattcgaacaactgc 40542885  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 44263622 - 44263696
Alignment:
Q  12 tattagtgtgacctctatcacttcaaacaagttcttttccaaatgttcttttgatgtgcttaagaattcaaacaa 86  Q
    |||||||||| ||||||||| |  |||||||| ||||||||  || ||||||||||| ||||||||||| |||||    
T  44263622 tattagtgtggcctctatcagtgaaaacaagtccttttccatgtgctcttttgatgtacttaagaattcgaacaa 44263696  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 42357570 - 42357647
Alignment:
Q  12 tattagtgtgacctctatcacttcaaacaagttcttttccaaatgttcttttgatgtgcttaagaattcaaacaactg 89  Q
    |||| ||||| ||||||||| |  |||||||| ||||||| | || ||||||||| | ||||||||||| ||||||||    
T  42357570 tatttgtgtggcctctatcagtgaaaacaagtccttttccgagtgctcttttgatatacttaagaattcgaacaactg 42357647  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 21279 - 21201
Alignment:
Q  12 tattagtgtgacctctatcacttcaaacaagttcttttccaaatgttcttttgatgtgcttaagaattcaaacaactgc 90  Q
    |||||||||||||||||||| |  |||||||| ||||||||  || ||||||||||| ||||||||||  |||||||||    
T  21279 tattagtgtgacctctatcagtgaaaacaagtccttttccaggtgctcttttgatgtacttaagaatttgaacaactgc 21201  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 34768574 - 34768652
Alignment:
Q  12 tattagtgtgacctctatcacttcaaacaagttcttttccaaatgttcttttgatgtgcttaagaattcaaacaactgc 90  Q
    |||||||||| ||||||||| |  |||||||| ||||||||  || ||||||||||| ||||||||||| |||||||||    
T  34768574 tattagtgtggcctctatcagtgaaaacaagtccttttccagctgctcttttgatgtacttaagaattcgaacaactgc 34768652  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 38506096 - 38506018
Alignment:
Q  12 tattagtgtgacctctatcacttcaaacaagttcttttccaaatgttcttttgatgtgcttaagaattcaaacaactgc 90  Q
    |||||||||| ||||||||| |  |||||||| ||||||||  || ||||||||||| ||||||||||| |||||||||    
T  38506096 tattagtgtggcctctatcagtgaaaacaagtccttttccagttgctcttttgatgtacttaagaattcgaacaactgc 38506018  T

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