View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1241_high_11 (Length: 360)
Name: NF1241_high_11
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1241_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 27725594 - 27725330
Alignment:
| Q |
11 |
ttattctacgaaatggcaatgctaactgctactgcttccattgtcacaaatctccgtcctctatcaccaatttcatttaataattcgcgccaaatttctt |
110 |
Q |
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| T |
27725594 |
ttattctacgaaatggcaatgctaactgctactacttccattgtcacaaatctccgtcctctatcaccaatttcatttaataattcgcgccaaatttctt |
27725495 |
T |
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| Q |
111 |
ctctcggaacaa------ctcgcctccacctcaaatgtcacgccacaaaggaagactcacctcaatccatagaatccacgagaccaaaaagtgaaacaat |
204 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27725494 |
ctctcggaacaagtacaactcgcctccacctcaaatgtcacgccacaaaggaagactcacctcaatccatagaatccacgagaccaaaaagtgaaacaat |
27725395 |
T |
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| Q |
205 |
cttacactctttctctccattgccattactttacgccgctgctctcttacccggaggtacatgat |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27725394 |
cttacactctttctctccattgccattactttacgccgctgctctcttacccggaggtacatgat |
27725330 |
T |
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