View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1241_high_4 (Length: 486)
Name: NF1241_high_4
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1241_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 89 - 400
Target Start/End: Original strand, 17070195 - 17070506
Alignment:
| Q |
89 |
tgagatgaagataggtgatgaagttgcagtcaagctgaagagtgataacaagtctgcaatcaacttagctaagaattctatcttccatggcaagagaaaa |
188 |
Q |
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| T |
17070195 |
tgagttgaagataggtgatgaagttgcagtcaagctgaagagtgataacaagtctgcaatcaacttagctaagaattctatcttccatggcaagagaaaa |
17070294 |
T |
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| Q |
189 |
cacgtagagacaaggtttcatttcatgagggatcaagtcaacaagaacgagctaattcttgagtattgtcctacacaagaccagttgacagacttgttca |
288 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
17070295 |
cacgtagagacaaggttccatttcatgagggatcaagtcaacaagaacgagctaattgttgagtattgtcctacacaagaccagttgacagacttgttca |
17070394 |
T |
|
| Q |
289 |
caaaagctctgaagagagatcagtttttgaagctaagaagagaaatacgggtggtgaattttgatagtttgaataaagaaagagtattagttgtataatt |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17070395 |
caaaagctctgaagagagatcagtttttgaagctaagaagagaaatacgggtggtgaattttgatagtttgaataaagaaagagtattagttgtataatt |
17070494 |
T |
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| Q |
389 |
caaactataggt |
400 |
Q |
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|||||||||||| |
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| T |
17070495 |
caaactataggt |
17070506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 89 - 400
Target Start/End: Complemental strand, 17578078 - 17577767
Alignment:
| Q |
89 |
tgagatgaagataggtgatgaagttgcagtcaagctgaagagtgataacaagtctgcaatcaacttagctaagaattctatcttccatggcaagagaaaa |
188 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17578078 |
tgagttgaagataggtgatgaagttgcagtcaagctgaagagtgataacaagtctgcaatcaacttagctaagaattctatcttccatggcaagagaaaa |
17577979 |
T |
|
| Q |
189 |
cacgtagagacaaggtttcatttcatgagggatcaagtcaacaagaacgagctaattcttgagtattgtcctacacaagaccagttgacagacttgttca |
288 |
Q |
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| T |
17577978 |
cacgtagagacaaggttccatttcatgagggatcaagtcaacaagaacgagctaattgttgagtattgtcctacacaagaccagttgacagacttgttca |
17577879 |
T |
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| Q |
289 |
caaaagctctgaagagagatcagtttttgaagctaagaagagaaatacgggtggtgaattttgatagtttgaataaagaaagagtattagttgtataatt |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17577878 |
caaaagctctgaagagagatcagtttttgaagctaagaagagaaatacgggtggtgaattttgatagtttgaataaagaaagagtattagttgtataatt |
17577779 |
T |
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| Q |
389 |
caaactataggt |
400 |
Q |
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|||||||||||| |
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| T |
17577778 |
caaactataggt |
17577767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 150 - 397
Target Start/End: Original strand, 29355475 - 29355717
Alignment:
| Q |
150 |
aacttagctaagaattctatcttccatggcaagagaaaacacgtagagacaaggtttcatttcatgagggatcaagtcaacaagaacgagctaattcttg |
249 |
Q |
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||||||| ||||||| ||||||||||||||||||| |||| |||| |||||| ||||||| |||| |||||||||||||||||| ||||| | ||| |
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| T |
29355475 |
aacttagttaagaatcctatcttccatggcaagagtaaacgtatagaaacaaggcttcattttctgagcgatcaagtcaacaagaacacgctaagtgttg |
29355574 |
T |
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| Q |
250 |
agtattgtcctacacaagaccagttgacagacttgttcacaaaagctctgaagagagatcagtttttgaagctaagaagagaaatacgggtggtgaattt |
349 |
Q |
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|||||||||||||||||||||| ||| |||||||| |||| ||||| ||||||||| |||||||||||| |||||||||||||| | |||||| || |
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| T |
29355575 |
agtattgtcctacacaagaccaattggcagacttggtcac--aagctatgaagagaggccagtttttgaagttaagaagagaaatatgaacggtgaactt |
29355672 |
T |
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| Q |
350 |
tgatagtttgaataaagaaagagtattagttgtataattcaaactata |
397 |
Q |
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||||||||||||| ||| ||||||| |||||||||||||||||||| |
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| T |
29355673 |
tgatagtttgaattaag---gagtattggttgtataattcaaactata |
29355717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 98 - 398
Target Start/End: Complemental strand, 40741030 - 40740733
Alignment:
| Q |
98 |
gataggtgatgaagttgcagtcaagctgaagagtgataacaagtctgcaatcaacttagctaagaattctatcttccatggcaagagaaaacacgtagag |
197 |
Q |
| |
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|||| ||||||| ||| |||||| || |||| |||||||||||||||||||||||||| ||||||| | |||| ||||||||||| |||||| |||| |
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| T |
40741030 |
gatatgtgatgaggttccagtcagactaaagattgataacaagtctgcaatcaacttagttaagaatcccatctgccatggcaagattaaacacatagaa |
40740931 |
T |
|
| Q |
198 |
acaaggtttcatttcatgagggatcaagtcaacaagaacgagctaattcttgagtattgtcctacacaagaccagttgacagacttgttcacaaaagctc |
297 |
Q |
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| T |
40740930 |
acgag-ttccattttcttaaggatcaagtcaataagaacaagctaagtgttgagttttgtcttacacaaaaacaattaacatacttattcacaaaagtta |
40740832 |
T |
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| Q |
298 |
tgaagagagatcagtttttgaagctaagaagagaaatacgggtggtgaattttgatagtttgaataaagaaagagtattagttgtataattcaaactata |
397 |
Q |
| |
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|||||| || |||||||||||||||||| |||||| | |||||||||||| ||| ||||| | ||| |||||||| ||||||||||| |||||||| |
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| T |
40740831 |
tgaagacaggctagtttttgaagctaagaaatgaaataggagtggtgaattttaatattttgatttaag--agagtattggttgtataatttaaactata |
40740734 |
T |
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