View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1241_low_11 (Length: 421)
Name: NF1241_low_11
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1241_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 99 - 410
Target Start/End: Original strand, 259312 - 259624
Alignment:
| Q |
99 |
taatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttnnnnnnnnngtttatttctgacatataaagaattgttgagccc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
259312 |
taatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttaaaaaaaaagtttatttctgacatataaagaattgttgagccc |
259411 |
T |
|
| Q |
199 |
tattcagatcgaggagagtaagagagcattttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgctttagtgataaat |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
259412 |
tattcagatcgaggagagtaagagagcattttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgctttagtgataaat |
259511 |
T |
|
| Q |
299 |
attgatatttgactaatttgtcatttacatccatcgacctaattctctctatttgactattttttcaaatgcaaacaat-aactcattgcatttgttgta |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
259512 |
attgatatttgactaatttgtcatttacatccatcgacttaattctctctatttgactattttttcaaatgcaaacaataaactcattgcatttgttgta |
259611 |
T |
|
| Q |
398 |
cacttctgcctat |
410 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
259612 |
cacgtctgcctat |
259624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 99 - 410
Target Start/End: Complemental strand, 656609 - 656297
Alignment:
| Q |
99 |
taatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttnnnnnnnnngtttatttctgacatataaagaattgttgagccc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
656609 |
taatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttaaaaaaaaagtttatttctgacatataaagaattgttgagccc |
656510 |
T |
|
| Q |
199 |
tattcagatcgaggagagtaagagagcattttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgctttagtgataaat |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
656509 |
tattcagatcgaggagagtaagagagcattttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgctttagtgataaat |
656410 |
T |
|
| Q |
299 |
attgatatttgactaatttgtcatttacatccatcgacctaattctctctatttgactattttttcaaatgcaaacaat-aactcattgcatttgttgta |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
656409 |
attgatatttgactaatttgtcatttacatccatcgacttaattctctctatttgactattttttcaaatgcaaacaataaactcattgcatttgttgta |
656310 |
T |
|
| Q |
398 |
cacttctgcctat |
410 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
656309 |
cacgtctgcctat |
656297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 99 - 410
Target Start/End: Complemental strand, 842344 - 842032
Alignment:
| Q |
99 |
taatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttnnnnnnnnngtttatttctgacatataaagaattgttgagccc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
842344 |
taatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttaaaaaaaaagtttatttctgacatataaagaattgttgagccc |
842245 |
T |
|
| Q |
199 |
tattcagatcgaggagagtaagagagcattttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgctttagtgataaat |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
842244 |
tattcagatcgaggagagtaagagagcattttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgctttagtgataaat |
842145 |
T |
|
| Q |
299 |
attgatatttgactaatttgtcatttacatccatcgacctaattctctctatttgactattttttcaaatgcaaacaat-aactcattgcatttgttgta |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
842144 |
attgatatttgactaatttgtcatttacatccatcgacttaattctctctatttgactattttttcaaatgcaaacaataaactcattgcatttgttgta |
842045 |
T |
|
| Q |
398 |
cacttctgcctat |
410 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
842044 |
cacgtctgcctat |
842032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University