View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1241_low_14 (Length: 362)
Name: NF1241_low_14
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1241_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 333
Target Start/End: Original strand, 29052748 - 29053067
Alignment:
| Q |
16 |
ataaaaaatataaactaggttacatcataatctaaagataaagagaggggaatattgcacctattttgaaagtatttttgcagaggatgaaaggaaagta |
115 |
Q |
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| T |
29052748 |
ataaaaaagataaactaggttacatcataatctaaagataaagagagggaaatattgcacctattttcaaagtatttttgcagaggatgaaaggaaagta |
29052847 |
T |
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| Q |
116 |
gttatgactattattttctttagtttgataccattataaagatgaacatctaagagacttggttggaataccaaagtggaaagggtgcaaagcttgaaca |
215 |
Q |
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| T |
29052848 |
gttatgactattattttctttagtttgataccattataaagatgaacatctaagagacttggttggaataccaaagtggacagggtgcaaagcttgaaca |
29052947 |
T |
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| Q |
216 |
cataatattcatcataaatcatacttaaacatatatgtttcaaaattcacatgaaaacggtct--caactaccaagttttcccctcgttaagatgacttt |
313 |
Q |
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| T |
29052948 |
cataatattcatcattattcatacttaaacatgtatgtttaaaaattcacatgaaaacggtctcacaactaccaagttttcccctcgttaagatgacttt |
29053047 |
T |
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| Q |
314 |
catgtatttaatcacaaaag |
333 |
Q |
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| T |
29053048 |
catgtatttaatcacaaaag |
29053067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 29057381 - 29057440
Alignment:
| Q |
84 |
aaagtatttttgcagaggatgaaaggaaagtagttatgactattattttctttagtttga |
143 |
Q |
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| T |
29057381 |
aaagcatttttgcagaggatgaaaggaaaatacttataactatcattttgtttagtttga |
29057440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 33900678 - 33900616
Alignment:
| Q |
50 |
aagataaagagaggggaatattgcacctattttgaaagtatttttgcagaggatgaaaggaaa |
112 |
Q |
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| T |
33900678 |
aagatgaagagagggaaattcttcacctattttgaaagcatttttgtagaggatgaaaggaaa |
33900616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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