View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1241_low_18 (Length: 354)

Name: NF1241_low_18
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1241_low_18
NF1241_low_18
[»] chr8 (9 HSPs)
chr8 (1-325)||(30648219-30648543)
chr8 (7-293)||(26088518-26088804)
chr8 (8-298)||(14726655-14726945)
chr8 (8-168)||(28865378-28865539)
chr8 (8-168)||(15329282-15329442)
chr8 (8-168)||(15509651-15509811)
chr8 (10-176)||(29552143-29552309)
chr8 (10-57)||(24508494-24508541)
chr8 (97-150)||(31040487-31040540)
[»] chr7 (2 HSPs)
chr7 (1-277)||(6611950-6612226)
chr7 (8-45)||(17294011-17294048)
[»] chr3 (1 HSPs)
chr3 (6-161)||(4819161-4819316)
[»] chr1 (1 HSPs)
chr1 (8-297)||(26087147-26087436)


Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 30648219 - 30648543
Alignment:
Q  1 gaagccataactcctcttcattttgcaagtcaaattggtgaggttaaaatgttagcttactttctccgtttgtgtccggaatcaattgaatacttgactg 100  Q
    |||| |||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30648219 gaaggcataactcctcttcattttgcatgtcaaaatggtgaggttcaaatgttagcttactttctccgtttgtgtccggaatcaattgaatacttgactg 30648318  T
Q  101 tgaggcgtgagacggcactccatattgctgttaagaatgaacaatatgaggcccttcaagtacttgttagctggctnnnnnnnnntacacagagaggggc 200  Q
    ||||||| ||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  30648319 tgaggcgcgagactgcactccatatttctgttaaaaatgaacaatatgaggcccttcaagtacttgttagctggctcaaaaaaaatacacagagaggggc 30648418  T
Q  201 tcaaaatctggaaaataaaatattaaacagaagggataaggcacacaacaccattttgcatatttcagcactaagtagtgacccgcaggtaatcttattc 300  Q
    |||||| |||||||||||||||||||||  |||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  30648419 tcaaaagctggaaaataaaatattaaaccaaagggataaggcaagcaacacaattttgcatatttcagcactaagtagtgacccgcaggtaatcttgttc 30648518  T
Q  301 ttattccattattaaaaccacatgt 325  Q
    |||||||||||||||||||||||||    
T  30648519 ttattccattattaaaaccacatgt 30648543  T

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Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 7 - 293
Target Start/End: Original strand, 26088518 - 26088804
Alignment:
Q  7 ataactcctcttcattttgcaagtcaaattggtgaggttaaaatgttagcttactttctccgtttgtgtccggaatcaattgaatacttgactgtgaggc 106  Q
    |||||||||||||||||||||||||||||||||||||||||    ||||  |||||||||   |||||||||||||| ||||||||||| ||||||||||    
T  26088518 ataactcctcttcattttgcaagtcaaattggtgaggttaatcatttagaatactttctcttcttgtgtccggaatctattgaatacttaactgtgaggc 26088617  T
Q  107 gtgagacggcactccatattgctgttaagaatgaacaatatgaggcccttcaagtacttgttagctggctnnnnnnnnntacacagagaggggctcaaaa 206  Q
      ||||| ||||| ||||||||||||||||||| ||| | |||||| |||||||||||||||| ||||||          ||| ||||| |||||||||     
T  26088618 acgagactgcactgcatattgctgttaagaatggacagtttgaggctcttcaagtacttgttatctggctcagaacaaacacaaagagaagggctcaaat 26088717  T
Q  207 tctggaaaataaaatattaaacagaagggataaggcacacaacaccattttgcatatttcagcactaagtagtgacccgcaggtaat 293  Q
     |||||||||| ||||||||||    ||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||||||    
T  26088718 gctggaaaatagaatattaaaccagtgggatgaggcacgcaacacgattttgcatatttcagcactacgtagtgacccgcaggtaat 26088804  T

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Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 8 - 298
Target Start/End: Original strand, 14726655 - 14726945
Alignment:
Q  8 taactcctcttcattttgcaagtcaaattggtgaggttaaaatgttagcttactttctccgtttgtgtccggaatcaattgaatacttgactgtgaggcg 107  Q
    |||||||||||||||| |||||||||| |||||||||| |  | |||| || |||||||   |||||||||||||| ||||||||||||||||| ||||     
T  14726655 taactcctcttcatttcgcaagtcaaaatggtgaggttgatcttttagtttgctttctcttattgtgtccggaatccattgaatacttgactgtaaggca 14726754  T
Q  108 tgagacggcactccatattgctgttaagaatgaacaatatgaggcccttcaagtacttgttagctggctnnnnnnnnntacacagagaggggctcaaaat 207  Q
     ||||| ||||| ||||||||||||||||||||||| | |||||| ||||||||||||||| |||||||         |    ||||||| ||| ||||     
T  14726755 ggagactgcactgcatattgctgttaagaatgaacagtttgaggcacttcaagtacttgttggctggctcaaagaaaattgtaagagaggtgctgaaaac 14726854  T
Q  208 ctggaaaataaaatattaaacagaagggataaggcacacaacaccattttgcatatttcagcactaagtagtgacccgcaggtaatcttat 298  Q
    || |||||||| |||||||||  ||||||| |||    |||||||||||||||||||||||| ||||||||||| | ||||||||| ||||    
T  14726855 ctagaaaataatatattaaaccaaagggatgaggacggcaacaccattttgcatatttcagccctaagtagtgagctgcaggtaattttat 14726945  T

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Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 28865378 - 28865539
Alignment:
Q  8 taactcctcttcattttgcaagtcaaattggtgaggttaaaatgttagcttactttctccgtttgtgtccggaatcaattgaatacttgactgtgaggcg 107  Q
    |||||||||||||||||||||| ||||||||||||||| |  | |||||| ||||||||   |||||||| ||||| |||||| | | |||||||||| |    
T  28865378 taactcctcttcattttgcaagccaaattggtgaggttgatcttttagctcactttctcttattgtgtccagaatccattgaagattggactgtgaggtg 28865477  T
Q  108 tgaga-cggcactccatattgctgttaagaatgaacaatatgaggcccttcaagtacttgtt 168  Q
    ||||| |  |||| ||||||||| ||||||||||||||| ||||||| ||||||| ||||||    
T  28865478 tgagacccccactgcatattgctattaagaatgaacaatttgaggcctttcaagtgcttgtt 28865539  T

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Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 15329282 - 15329442
Alignment:
Q  8 taactcctcttcattttgcaagtcaaattggtgaggttaaaatgttagcttactttctccgtttgtgtccggaatcaattgaatacttgactgtgaggcg 107  Q
    |||||||||||||||||||||| ||||||||||||||| |  | |||||| ||||||||   | |||||| ||||| |||||| | | |||||||||| |    
T  15329282 taactcctcttcattttgcaagccaaattggtgaggttgatcttttagctcactttctcttctcgtgtccagaatccattgaagattggactgtgaggtg 15329381  T
Q  108 tgagacggcactccatattgctgttaagaatgaacaatatgaggcccttcaagtacttgtt 168  Q
     |||||  |||| ||||||||| ||||||||||||||| |||| || ||||||| ||||||    
T  15329382 cgagaccccactgcatattgctattaagaatgaacaatttgagtcctttcaagtgcttgtt 15329442  T

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Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 15509651 - 15509811
Alignment:
Q  8 taactcctcttcattttgcaagtcaaattggtgaggttaaaatgttagcttactttctccgtttgtgtccggaatcaattgaatacttgactgtgaggcg 107  Q
    |||||||||||||||||||||| ||||||||||||||| |  | |||||| ||||||||   | |||||| ||||| |||||| | | |||||||||| |    
T  15509651 taactcctcttcattttgcaagccaaattggtgaggttgatcttttagctcactttctcttctcgtgtccagaatccattgaagattggactgtgaggtg 15509750  T
Q  108 tgagacggcactccatattgctgttaagaatgaacaatatgaggcccttcaagtacttgtt 168  Q
     |||||  |||| ||||||||| ||||||||||||||| |||| || ||||||| ||||||    
T  15509751 cgagaccccactgcatattgctattaagaatgaacaatttgagtcctttcaagtgcttgtt 15509811  T

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Target: chr8; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 10 - 176
Target Start/End: Original strand, 29552143 - 29552309
Alignment:
Q  10 actcctcttcattttgcaagtcaaattggtgaggttaaaatgttagcttactttctccgtttgtgtccggaatcaattgaatacttgactgtgaggcgtg 109  Q
    ||||||||||||| |||||| |||||||| |||||| |  | |||||||||||||||      ||||| ||||| ||||||||||||||||||||| | |    
T  29552143 actcctcttcattatgcaagccaaattggagaggttgaccttttagcttactttctcaacgcatgtcctgaatctattgaatacttgactgtgaggtgcg 29552242  T
Q  110 agacggcactccatattgctgttaagaatgaacaatatgaggcccttcaagtacttgttagctggct 176  Q
    |||| ||||| ||||||||| |||| |||| ||| |  || |||||  ||||||| ||| |||||||    
T  29552243 agaccgcacttcatattgctattaataatgcacagttcgacgccctaaaagtactagttggctggct 29552309  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 24508494 - 24508541
Alignment:
Q  10 actcctcttcattttgcaagtcaaattggtgaggttaaaatgttagct 57  Q
    ||||||||||||||||||||||||| |||||||| | |||| ||||||    
T  24508494 actcctcttcattttgcaagtcaaaatggtgaggatgaaattttagct 24508541  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 31040540 - 31040487
Alignment:
Q  97 actgtgaggcgtgagacggcactccatattgctgttaagaatgaacaatatgag 150  Q
    ||||||||| ||||||| ||||| ||||||||||| || |||||||| ||||||    
T  31040540 actgtgaggggtgagactgcacttcatattgctgtgaaaaatgaacattatgag 31040487  T

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Target: chr7 (Bit Score: 114; Significance: 9e-58; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 6612226 - 6611950
Alignment:
Q  1 gaagccataactcctcttcattttgcaagtcaaattggtgaggttaaaatgttagcttactttctccgtttgtgtccggaatcaattgaatacttgactg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |  | |||||| | ||||||   |||||||||||||| |||||||| |||||||    
T  6612226 gaagccataactcctcttcattttgcaagtcaaattggtgaggttgatcttttagctaaatttctcaagttgtgtccggaatccattgaatatttgactg 6612127  T
Q  101 tgaggcgtgagacggcactccatattgctgttaagaatgaacaatatgaggcccttcaagtacttgttagctggctnnnnnnnnntacacagagaggggc 200  Q
    ||||||  ||||| ||||| ||||||||| |||||||| |||||| ||||||||||| |||||||||| |||||||         |  |  || ||| ||    
T  6612126 tgaggcacgagactgcactgcatattgctattaagaatcaacaatttgaggcccttcgagtacttgttggctggctgagaacacatgtagcgataggtgc 6612027  T
Q  201 tcaaaatctggaaaataaaatattaaacagaagggataaggcacacaacaccattttgcatatttcagcactaagta 277  Q
     ||||| ||||||||| ||||||||||||  |||||| |||||  ||||||||||||||||||||||||||||||||    
T  6612026 gcaaaagctggaaaatcaaatattaaacaagagggatgaggcaggcaacaccattttgcatatttcagcactaagta 6611950  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 17294048 - 17294011
Alignment:
Q  8 taactcctcttcattttgcaagtcaaattggtgaggtt 45  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17294048 taactcctcttcattttgcaagtcaaattggtgaggtt 17294011  T

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Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 6 - 161
Target Start/End: Original strand, 4819161 - 4819316
Alignment:
Q  6 cataactcctcttcattttgcaagtcaaattggtgaggttaaaatgttagcttactttctccgtttgtgtccggaatcaattgaatacttgactgtgagg 105  Q
    ||||||||||||||||||||||||||||||||| |||||| || | |||||| | ||||||  |   ||||||||||| |||||||||||||||||||||    
T  4819161 cataactcctcttcattttgcaagtcaaattggcgaggttgaacttttagctaattttctctttgcttgtccggaatctattgaatacttgactgtgagg 4819260  T
Q  106 cgtgagacggcactccatattgctgttaagaatgaacaatatgaggcccttcaagt 161  Q
      |||||| ||| | ||||||||||| | ||||||||| |||||||||||||||||    
T  4819261 tttgagactgcattgcatattgctgtcatgaatgaacagtatgaggcccttcaagt 4819316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 8 - 297
Target Start/End: Complemental strand, 26087436 - 26087147
Alignment:
Q  8 taactcctcttcattttgcaagtcaaattggtgaggttaaaatgttagcttactttctccgtttgtgtccggaatcaattgaatacttgactgtgaggcg 107  Q
    ||||| ||||||||||||||||||||||||| |||||| |  | |||||| | || |||| | | |||||  | || |||  | |  ||||||||||| |    
T  26087436 taactgctcttcattttgcaagtcaaattggagaggttgaccttttagctaaattcctccttgtatgtcctaattccattagagatgtgactgtgaggtg 26087337  T
Q  108 tgagacggcactccatattgctgttaagaatgaacaatatgaggcccttcaagtacttgttagctggctnnnnnnnnntacacagagaggggctcaaaat 207  Q
    |||||| ||| | ||||||||| | |||||||||||||||||||||||||||||||||||| | |||||         || ||| ||||| |||  | |     
T  26087336 tgagaccgcattgcatattgctatcaagaatgaacaatatgaggcccttcaagtacttgttggatggctcgaaacaaataaacaaagaggcgctgtagag 26087237  T
Q  208 ctggaaaataaaatattaaacagaagggataaggcacacaacaccattttgcatatttcagcactaagtagtgacccgcaggtaatctta 297  Q
    |||||||||  |||||||||||  |||||  | |||  |||||||||||||||| ||||||||||||||| ||| |||||||||||||||    
T  26087236 ctggaaaatggaatattaaacaagagggacgatgcaggcaacaccattttgcatgtttcagcactaagtattgagccgcaggtaatctta 26087147  T

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