View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1241_low_2 (Length: 608)
Name: NF1241_low_2
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1241_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 354 - 579
Target Start/End: Original strand, 44993493 - 44993718
Alignment:
| Q |
354 |
gcaagtgtttgttaagagttgttgaaagcacaagagtggaaattcattctgctgaaattgtgcatggaatgcatcccagcacatagaattattgatcatc |
453 |
Q |
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| T |
44993493 |
gcaagtgtttgttaagagttgttgaaagcacaagagtggaaattcattctgctgaaattgtgcatggaatgcatcccagcacatagaattattgatcatc |
44993592 |
T |
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| Q |
454 |
atatccacatttgaattcaatgaaagcaaatcaaattacaaatagtagcaaaatctcaacgagaacgagaattaattcatctnnnnnnnntgaaagaacg |
553 |
Q |
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| T |
44993593 |
atatccacatttgaattcaatgaaagcaaatcaaattacaaatagtagcaaaatctcaacgagaacgagaattaattcatctaaaaaaaatgaaagaacg |
44993692 |
T |
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| Q |
554 |
tgcgaagaagagatagaaatgaaatg |
579 |
Q |
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| T |
44993693 |
tgcgaagaagagatagaaatgaaatg |
44993718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 111 - 225
Target Start/End: Original strand, 44993265 - 44993379
Alignment:
| Q |
111 |
agggataccacatacattcagacaacttcccataagcattaagataggctaaaaatttgaaggataagaatcaggaacagattaacttaagacaacagtc |
210 |
Q |
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| T |
44993265 |
agggataccacatacattcagacaacttcccataagcattaagataggcaaaaaatttgaaggataagaatcaggaacagattaacttaagacaacagtc |
44993364 |
T |
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| Q |
211 |
tcactttttctttaa |
225 |
Q |
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| T |
44993365 |
tcactttttctttaa |
44993379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 44993121 - 44993232
Alignment:
| Q |
1 |
tagaaacaatgcattcaagaaatactgcggtttccgatgttttattgaagatattttcaggaagttaacaatattgtggttaatcgtacaaatcattgat |
100 |
Q |
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| T |
44993121 |
tagaaacaatgcattcaagaaatattgcggtttccgatgttttattgaagatattttcaggaagttaacaatattgtggttaatcttacaaatcattgat |
44993220 |
T |
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| Q |
101 |
ttataaactgag |
112 |
Q |
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| T |
44993221 |
ttataaactgag |
44993232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 446 - 518
Target Start/End: Complemental strand, 40909335 - 40909262
Alignment:
| Q |
446 |
tgatcatcat-atccacatttgaattcaatgaaagcaaatcaaattacaaatagtagcaaaatctcaacgagaa |
518 |
Q |
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| T |
40909335 |
tgatcatcattatcaaaatttgaattcaatgaaagcaaatcaaattacaaatagtagcaaaatctcaacgagaa |
40909262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 446 - 518
Target Start/End: Original strand, 44984994 - 44985067
Alignment:
| Q |
446 |
tgatcatcat-atccacatttgaattcaatgaaagcaaatcaaattacaaatagtagcaaaatctcaacgagaa |
518 |
Q |
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| T |
44984994 |
tgatcatcattatcaaaatttgaattcaatgaaagcaaatcaaattacaaatagtagcaaaatctcaacgagaa |
44985067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 442
Target Start/End: Original strand, 44981795 - 44981844
Alignment:
| Q |
391 |
ggaaattcattctgctgaaattgtgcatggaatgcatcccagcacatagaat |
442 |
Q |
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| T |
44981795 |
ggaaattcattatgctgagattg--catggaatgcatcccagcacatagaat |
44981844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 391
Target Start/End: Original strand, 44981669 - 44981706
Alignment:
| Q |
354 |
gcaagtgtttgttaagagttgttgaaagcacaagagtg |
391 |
Q |
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| T |
44981669 |
gcaagtgtttgttaagaattgttgaaagcataagagtg |
44981706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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