View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1241_low_21 (Length: 308)

Name: NF1241_low_21
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1241_low_21
NF1241_low_21
[»] chr3 (13 HSPs)
chr3 (13-281)||(5299411-5299679)
chr3 (19-258)||(5250872-5251111)
chr3 (37-275)||(5268742-5268980)
chr3 (146-258)||(4388151-4388263)
chr3 (9-105)||(8455513-8455609)
chr3 (9-105)||(6736849-6736945)
chr3 (9-105)||(8590588-8590684)
chr3 (9-105)||(6553512-6553608)
chr3 (9-104)||(6479056-6479151)
chr3 (19-105)||(6519246-6519332)
chr3 (29-107)||(5281508-5281586)
chr3 (40-105)||(6948128-6948193)
chr3 (10-106)||(6837991-6838087)
[»] scaffold0425 (1 HSPs)
scaffold0425 (9-105)||(6551-6647)
[»] chr7 (1 HSPs)
chr7 (10-107)||(6572403-6572500)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 281
Target Start/End: Complemental strand, 5299679 - 5299411
Alignment:
Q  13 gagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgcaacct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5299679 gagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgcaacct 5299580  T
Q  113 acacaccaaacaagaagctgaaagttgattctcaaccttctactagcaaggtattcgacttcttttcatcgtttactgatccctttgagtctaggatcaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5299579 acacaccaaacaagaagctgaaagttgattctcaaccttctactagcaaggtattcgacttcttttcatcgtgtactgatccctttgagtctaggatcaa 5299480  T
Q  213 agaattgctagagaagttagaatttctagcaaagcaaaaggatatgttagggttaaaacaagaaatttg 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5299479 agaattgctagagaagttagaatttctagcaaagcaaaaggatatgttagggttaaaacaagaaatttg 5299411  T

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Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 5251111 - 5250872
Alignment:
Q  19 aagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgcaacctacacac 118  Q
    |||||||||||||||   ||||||||||||||||||| |||||||||||||  ||  ||||| |  || || || || ||||||||||||||  |  |||    
T  5251111 aagcaataccaaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatgcac 5251012  T
Q  119 caaacaagaagctgaaagttgattctcaaccttctactagcaaggtattcgacttcttttcatcgtttactgatccctttgagtctaggatcaaagaatt 218  Q
    ||   ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||||| |||||||| ||||||||    
T  5251011 cactgaagaagctgaaagctgaatctcaaccttctactagcaaggtattcgacttcttttcatctttcactaatccatttgaatctaggattaaagaatt 5250912  T
Q  219 gctagagaagttagaatttctagcaaagcaaaaggatatg 258  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  5250911 gctagagaagctagaatttcttgcaaagcaaaaggatatg 5250872  T

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Target: chr3; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 37 - 275
Target Start/End: Complemental strand, 5268980 - 5268742
Alignment:
Q  37 tacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgcaacctacacaccaaacaagaagctgaaag 136  Q
    ||||||||||||||||||| |||||||||||||  ||  ||||| |  || || || || ||||||||||||||  | ||||||   ||||||| ||||     
T  5268980 tacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatacaccattgaagaagcagaaac 5268881  T
Q  137 ttgattctcaaccttctactagcaaggtattcgacttcttttcatcgtttactgatccctttgagtctaggatcaaagaattgctagagaagttagaatt 236  Q
    |||| ||||||||||||||||||||||||||||||||| |||| || || ||| |||| ||||||||||||||||||||||||||||||||| |||||||    
T  5268880 ttgaatctcaaccttctactagcaaggtattcgacttcatttcgtctttcactaatccatttgagtctaggatcaaagaattgctagagaagctagaatt 5268781  T
Q  237 tctagcaaagcaaaaggatatgttagggttaaaacaaga 275  Q
    ||| ||||| |||||| ||||| | || |||||||||||    
T  5268780 tcttgcaaaacaaaagcatatgcttggattaaaacaaga 5268742  T

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Target: chr3; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 146 - 258
Target Start/End: Original strand, 4388151 - 4388263
Alignment:
Q  146 aaccttctactagcaaggtattcgacttcttttcatcgtttactgatccctttgagtctaggatcaaagaattgctagagaagttagaatttctagcaaa 245  Q
    ||||||||||||||||||||||| ||||||||||||| || | | |||| ||||| |||||||||||||||||||||||||||||||||||||| || ||    
T  4388151 aaccttctactagcaaggtattcaacttcttttcatctttcattaatccatttgaatctaggatcaaagaattgctagagaagttagaatttcttgcgaa 4388250  T
Q  246 gcaaaaggatatg 258  Q
    |||||||||||||    
T  4388251 gcaaaaggatatg 4388263  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 8455609 - 8455513
Alignment:
Q  9 agcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt 105  Q
    |||||||| |||||| ||||||| |  ||| |||||||||||||||| |||||||||||||||||| ||||||||||| ||||| || |||||||||    
T  8455609 agcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgatcttaaacatgttgtttatgaagcagaccaactattagatgagatt 8455513  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 6736945 - 6736849
Alignment:
Q  9 agcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt 105  Q
    |||||||| |||||| ||||||| |  ||| |||||||||||||||| ||| |||||||||||| | ||||||||||| ||||| ||||||||||||    
T  6736945 agcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttctttatgaagcagaccaactattggatgagatt 6736849  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 8590684 - 8590588
Alignment:
Q  9 agcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt 105  Q
    |||||||| |||||| |||| ||||  ||| |||||||||||||||| ||| |||||||||||||| ||||||||||| ||||| || |||||||||    
T  8590684 agcagagataaagcagtaccgaagcaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatt 8590588  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 6553512 - 6553608
Alignment:
Q  9 agcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt 105  Q
    |||||||| |||||| ||||||| |  ||| |||||||||||||||| ||| |||||||||||||| ||||| ||||| ||||| || |||||||||    
T  6553512 agcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaggcagaccaactattagatgagatt 6553608  T

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Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 6479056 - 6479151
Alignment:
Q  9 agcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagat 104  Q
    |||||||| |||||| ||||||| |  ||| |||||||||||||||| | | |||||||||||||| ||||||||||| ||||| || ||||||||    
T  6479056 agcagagataaagcagtaccaaatcatatatgtgaagaagtggcttgataaacttaaacatgttgtttatgaagcagaccaactattagatgagat 6479151  T

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Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 6519246 - 6519332
Alignment:
Q  19 aagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt 105  Q
    ||||| ||||||| |  ||| |||||||||||||||| ||| |||||||||||||| ||||||||||| ||||| || |||||||||    
T  6519246 aagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatt 6519332  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 5281586 - 5281508
Alignment:
Q  29 aaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgc 107  Q
    ||||| |||| || ||||||||||||| |||||||||||||| ||| ||||| ||||| ||| |||| |||||||||||    
T  5281586 aaagcacatatgtaaagaagtggcttgatgatcttaaacatgctgtatatgaggcagaccaaattttcgatgagattgc 5281508  T

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Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 6948193 - 6948128
Alignment:
Q  40 gtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt 105  Q
    |||||||||||||||| ||| |||||||||||||| ||||| ||||| ||||| || |||||||||    
T  6948193 gtgaagaagtggcttgatgaacttaaacatgttgtctatgaggcagaccaactgttagatgagatt 6948128  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 6837991 - 6838087
Alignment:
Q  10 gcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattg 106  Q
    |||||||||||| | ||||||| |  | | |||||||||||| ||| | |||| |||||||  || ||||||| ||||||| | |||||||||||||    
T  6837991 gcagagacaaagaagtaccaaaaccaaaatgtgaagaagtggtttgataatctaaaacatgaggtatatgaagtagatcaattgttggatgagattg 6838087  T

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Target: scaffold0425 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 6551 - 6647
Alignment:
Q  9 agcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt 105  Q
    |||||||| |||||| ||||||| |  ||| |||||||||||||||| ||| |||||||||||||| ||||| ||||| ||||| || |||||||||    
T  6551 agcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaggcagaccaactattagatgagatt 6647  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 6572403 - 6572500
Alignment:
Q  10 gcagagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgc 107  Q
    ||||||||||| || ||||||| | || |||||||||  ||||||| |  ||| |||||||  || ||||||| ||||||| | ||||||||||||||    
T  6572403 gcagagacaaaacagtaccaaaacccaaacgtgaagatttggcttgatcgtctaaaacatgaggtatatgaagtagatcaattgttggatgagattgc 6572500  T

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