View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1241_low_24 (Length: 296)
Name: NF1241_low_24
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1241_low_24 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 75 - 296
Target Start/End: Original strand, 49516914 - 49517135
Alignment:
| Q |
75 |
agttcaatggtcattatactatacttgttacctataggaattatgttgttgcatccttgctggagcagcatccgccaatagattatgttaaacataataa |
174 |
Q |
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| T |
49516914 |
agttcaatggtcattatactatactttttacctataggaattatgttgttgcatccttgctggagcagcatccaccaatagattatgttaaacataataa |
49517013 |
T |
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| Q |
175 |
ggtccacaattgtgaaaagtaactacaagaatcttggattaaacaaaagtcattgttcattccattccactagcagctgcttgtattctgaataatacct |
274 |
Q |
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| T |
49517014 |
ggtccacaattgtgaaaagtaactacaagagtattggattaaacaaaagtcattgttcattccattccactagcagctgcttgtattctaaataatacct |
49517113 |
T |
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| Q |
275 |
ctttccttaatcttgcaaggcc |
296 |
Q |
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| T |
49517114 |
cttaccttaatcttgcaaggcc |
49517135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 49515575 - 49515509
Alignment:
| Q |
81 |
atggtcattatactatacttgttacctataggaattatgttgttgcatccttgctggagcagcatcc |
147 |
Q |
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| T |
49515575 |
atggtcattatattatacttgttgcttatatgaattatgttgttgcatacttgtcggagcagcatcc |
49515509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 22990312 - 22990259
Alignment:
| Q |
81 |
atggtcattatactatacttgttacctataggaattatgttgttgcatccttgc |
134 |
Q |
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| T |
22990312 |
atggtaattatattatacttgttgcctatatgagttatgttgatgcatccttgc |
22990259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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