View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1241_low_25 (Length: 293)
Name: NF1241_low_25
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1241_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 6 - 264
Target Start/End: Original strand, 13630147 - 13630405
Alignment:
| Q |
6 |
agaagcaaaggcgaatatctaactttgttacattttccaatgtgtttaggtcccgtggaacttgctgctgctggagtttccattgctttgttcaaccaag |
105 |
Q |
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| T |
13630147 |
agaaacaatggcgaatatctaactttgttacattttccaatgtgtttaggtcccgtggaacttgctgctgctggagtttccattgctttgttcaaccaag |
13630246 |
T |
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| Q |
106 |
cttcaaagatcaccatatttcctcttgttagtattacaacttcctttgtagctgaggaagatactatcaaaaggatgaatatcaaagcagctgaaaatga |
205 |
Q |
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| T |
13630247 |
cttcaaagatcaccatatttcctcttgttagtattacaacttcctttgtagctgaggaagatactatcaaaaggatgaatatcaaagcagctgaaaatga |
13630346 |
T |
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| Q |
206 |
taagagtaaattaactgaagtaacacctgagagtgatgtggttcaagacatagagaaag |
264 |
Q |
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| T |
13630347 |
taagagtaaattaactgaagtaacacctgagagtgatgtggttcaagacatagagaaag |
13630405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 6 - 264
Target Start/End: Original strand, 13730559 - 13730817
Alignment:
| Q |
6 |
agaagcaaaggcgaatatctaactttgttacattttccaatgtgtttaggtcccgtggaacttgctgctgctggagtttccattgctttgttcaaccaag |
105 |
Q |
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| T |
13730559 |
agaaacaatggcgaatatctaactttgttacattttccaatgtgtttaggtcccgtggaacttgctgctgctggagtttccattgctttgttcaaccaag |
13730658 |
T |
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| Q |
106 |
cttcaaagatcaccatatttcctcttgttagtattacaacttcctttgtagctgaggaagatactatcaaaaggatgaatatcaaagcagctgaaaatga |
205 |
Q |
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| T |
13730659 |
cttcaaagatcaccatatttcctcttgttagtattacaacttcctttgtagctgaggaagatactatcaaaaggatgaatatcaaagcagctgaaaatga |
13730758 |
T |
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| Q |
206 |
taagagtaaattaactgaagtaacacctgagagtgatgtggttcaagacatagagaaag |
264 |
Q |
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| T |
13730759 |
taagagtaaattaactgaagtaacacctgagagtgatgtggttcaagacatagagaaag |
13730817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 45 - 194
Target Start/End: Original strand, 13748418 - 13748567
Alignment:
| Q |
45 |
atgtgtttaggtcccgtggaacttgctgctgctggagtttccattgctttgttcaaccaagcttcaaagatcaccatatttcctcttgttagtattacaa |
144 |
Q |
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| T |
13748418 |
atgtggttaggaccggtggaacttgctgcagcaggagtttccattgctttgttcaaccaagcttcaaggattaccatatttcctcttgttagtattacaa |
13748517 |
T |
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| Q |
145 |
cttcctttgtagctgaggaagatactatcaaaaggatgaatatcaaagca |
194 |
Q |
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| T |
13748518 |
cttcctttgtagctgaggaagatactattgaaagaatgaatatcaaagca |
13748567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 13647993 - 13648051
Alignment:
| Q |
45 |
atgtgtttaggtcccgtggaacttgctgctgctggagtttccattgctttgttcaacca |
103 |
Q |
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| T |
13647993 |
atgtggttaggaccggtggaacttgctgcagcaggagtttccattgctttgttcaacca |
13648051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 45 - 202
Target Start/End: Original strand, 9276514 - 9276671
Alignment:
| Q |
45 |
atgtgtttaggtcccgtggaacttgctgctgctggagtttccattgctttgttcaaccaagcttcaaagatcaccatatttcctcttgttagtattacaa |
144 |
Q |
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| T |
9276514 |
atgtgtttagggccggttgaacttgcggcagcaggagtttccattgctgtgttcaaccaagcttcaaggattaccatttttcctttggtcagtattacaa |
9276613 |
T |
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| Q |
145 |
cttcctttgtagctgaggaagatactatcaaaaggatgaatatcaaagcagctgaaaa |
202 |
Q |
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| T |
9276614 |
cttcctttgtagctgaagaagatactatggatagaatcaataccaaagcagcagaaaa |
9276671 |
T |
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