View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1241_low_26 (Length: 290)
Name: NF1241_low_26
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1241_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 37 - 204
Target Start/End: Original strand, 17070339 - 17070506
Alignment:
| Q |
37 |
gaacgagctaattcttgagtattgtcctacacaagaccagttgacagacttgttcacaaaagctctgaagagagatcagtttttgaagctaagaagagaa |
136 |
Q |
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| T |
17070339 |
gaacgagctaattgttgagtattgtcctacacaagaccagttgacagacttgttcacaaaagctctgaagagagatcagtttttgaagctaagaagagaa |
17070438 |
T |
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| Q |
137 |
atacgggtggtgaattttgatagtttgaataaagaaagagtattagttgtataattcaaactataggt |
204 |
Q |
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| T |
17070439 |
atacgggtggtgaattttgatagtttgaataaagaaagagtattagttgtataattcaaactataggt |
17070506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 37 - 204
Target Start/End: Complemental strand, 17577934 - 17577767
Alignment:
| Q |
37 |
gaacgagctaattcttgagtattgtcctacacaagaccagttgacagacttgttcacaaaagctctgaagagagatcagtttttgaagctaagaagagaa |
136 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17577934 |
gaacgagctaattgttgagtattgtcctacacaagaccagttgacagacttgttcacaaaagctctgaagagagatcagtttttgaagctaagaagagaa |
17577835 |
T |
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| Q |
137 |
atacgggtggtgaattttgatagtttgaataaagaaagagtattagttgtataattcaaactataggt |
204 |
Q |
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| T |
17577834 |
atacgggtggtgaattttgatagtttgaataaagaaagagtattagttgtataattcaaactataggt |
17577767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 201
Target Start/End: Original strand, 29355572 - 29355717
Alignment:
| Q |
51 |
ttgagtattgtcctacacaagaccagttgacagacttgttcacaaaagctctgaagagagatcagtttttgaagctaagaagagaaatacgggtggtgaa |
150 |
Q |
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||||||||||||||||||||||||| ||| |||||||| |||||| ||| ||||||||| |||||||||||| |||||||||||||| | |||||| |
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| T |
29355572 |
ttgagtattgtcctacacaagaccaattggcagacttggtcacaa--gctatgaagagaggccagtttttgaagttaagaagagaaatatgaacggtgaa |
29355669 |
T |
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| Q |
151 |
ttttgatagtttgaataaagaaagagtattagttgtataattcaaactata |
201 |
Q |
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| T |
29355670 |
ctttgatagtttgaattaag---gagtattggttgtataattcaaactata |
29355717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 37 - 202
Target Start/End: Complemental strand, 40740896 - 40740733
Alignment:
| Q |
37 |
gaacgagctaattcttgagtattgtcctacacaagaccagttgacagacttgttcacaaaagctctgaagagagatcagtttttgaagctaagaagagaa |
136 |
Q |
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|||| |||||| | |||||| ||||| ||||||| | || || ||| |||| |||||||||| | |||||| || |||||||||||||||||| ||| |
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| T |
40740896 |
gaacaagctaagtgttgagttttgtcttacacaaaaacaattaacatacttattcacaaaagttatgaagacaggctagtttttgaagctaagaaatgaa |
40740797 |
T |
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| Q |
137 |
atacgggtggtgaattttgatagtttgaataaagaaagagtattagttgtataattcaaactatag |
202 |
Q |
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||| | |||||||||||| ||| ||||| | ||| |||||||| ||||||||||| ||||||||| |
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| T |
40740796 |
ataggagtggtgaattttaatattttgatttaag--agagtattggttgtataatttaaactatag |
40740733 |
T |
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