View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1241_low_3 (Length: 537)
Name: NF1241_low_3
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1241_low_3 |
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| [»] scaffold0044 (2 HSPs) |
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| [»] scaffold0488 (2 HSPs) |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: scaffold0044 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 32628 - 33074
Alignment:
| Q |
1 |
tcagttgcaatagaggagtgagacagggggacccattgtcccctcttttattttgcatagctgaggaggttttaagtagagggataagcaagcttgtgga |
100 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32628 |
tcagttgcaatagaggagtgagacaaggggaccccttgtcccctcttttattttacatagctgaggaggttttaagtagagggataagcaagcttgtgga |
32727 |
T |
|
| Q |
101 |
agatggcaaggtgaaacaaatcaaagcttctagaaatactcttgtcccttcacactgtttttatgctgatgatctgatgatttattgtaaaggtaactta |
200 |
Q |
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|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
32728 |
agatggcaaggtgaaacagatcaaagcttctagaaatactcttgtcccttcacacggtttttatgctgatgatctgatgatttattgtaaaggtaacata |
32827 |
T |
|
| Q |
201 |
tcttctcttgattgtctt-aagacttgttcactgaatatgctgcaagttctggtcaaatcattaataataggaaatcttctattcatgccggaggcatct |
299 |
Q |
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|
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| ||||||||| | |
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| T |
32828 |
tcttctcttgattgtcttaaagacttgttcactgaatatgctgcatgttctagtcaaatcattaataataggaaatcttatattcatgtcggaggcattt |
32927 |
T |
|
| Q |
300 |
cagatagcaggcttcgaaatatggcacaaatgcttggtttttctttgggatccttaccttttacatatttaggtgcacctatttttaaaggcagaccaaa |
399 |
Q |
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|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32928 |
cagatagcaggcttcgaaatatggtacaaatgcttggtttttctttgggatccttaccttttacatatttaggtgcacctatttttaaaggtagaccaaa |
33027 |
T |
|
| Q |
400 |
aacttactattttcaacctatagctaataaaattaagctcaaacttg |
446 |
Q |
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|
||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33028 |
aacttactattttcaacctatagctgataaaattaagctcaaacttg |
33074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 479
Target Start/End: Original strand, 33106 - 33137
Alignment:
| Q |
448 |
tggaagagtccaattggtgaaatctgtggtgc |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
33106 |
tggaagagtccaattggtgaaatctgtggtgc |
33137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0488 (Bit Score: 180; Significance: 6e-97; HSPs: 2)
Name: scaffold0488
Description:
Target: scaffold0488; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 8687 - 8496
Alignment:
| Q |
1 |
tcagttgcaatagaggagtgagacagggggacccattgtcccctcttttattttgcatagctgaggaggttttaagtagagggataagcaagcttgtgga |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8687 |
tcagttgcaatagaggagtgagacaaggggaccccttgtcccctcttttattttgcatagctgaggaggttttaagtagagggataagcaagcttgtgga |
8588 |
T |
|
| Q |
101 |
agatggcaaggtgaaacaaatcaaagcttctagaaatactcttgtcccttcacactgtttttatgctgatgatctgatgatttattgtaaag |
192 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8587 |
agatggcaaggtgaaacagatcaaagcttctagaaatactcttgtcccttcacactgtttttatgctgatgatctgatgatttattgtaaag |
8496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0488; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 526 - 335
Alignment:
| Q |
1 |
tcagttgcaatagaggagtgagacagggggacccattgtcccctcttttattttgcatagctgaggaggttttaagtagagggataagcaagcttgtgga |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
526 |
tcagttgcaatagaggagtgagacatggggaccccttgtcccctcttttatttttcatagctgaggaggttttaagtagagggataagcaagcttgtgga |
427 |
T |
|
| Q |
101 |
agatggcaaggtgaaacaaatcaaagcttctagaaatactcttgtcccttcacactgtttttatgctgatgatctgatgatttattgtaaag |
192 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
426 |
agatggcaaggtgaaacagatcaaagcttctagaaatactcttgtcccttcacactgtttttatgctgatgatctgatgatttattgtaaag |
335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 16474884 - 16474729
Alignment:
| Q |
11 |
tagaggagtgagacagggggacccattgtcccctcttttattttgcatagctgaggaggttttaagtagagggataagcaagcttgtggaagatggcaag |
110 |
Q |
| |
|
|||||||||||| || ||||| || |||||||||||||| |||||||| |||||||| ||| | || || || || || |||||||| || || || ||| |
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| T |
16474884 |
tagaggagtgaggcaaggggatcctttgtcccctcttttgttttgcattgctgaggaagttcttagcaggggcatcagtaagcttgttgaggagggtaag |
16474785 |
T |
|
| Q |
111 |
gtgaaacaaatcaaagcttctagaaatactcttgtcccttcacactgtttttatgc |
166 |
Q |
| |
|
||||||||| | |||| | |||||| ||||||||||||||||||| |||||||| |
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|
| T |
16474784 |
gtgaaacaatttgcagctgcaagaaatgctcttgtcccttcacactgcttttatgc |
16474729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 287
Target Start/End: Original strand, 15077788 - 15078067
Alignment:
| Q |
9 |
aatagaggagtgagacagggggacccattgtcccctcttttattttgcatagctgaggaggttttaagtagagggataagcaagcttgtggaagatggca |
108 |
Q |
| |
|
|||||||| ||||||||||| || ||| ||||||| || | ||||| |||||||| || ||||| ||||| ||||| || |||||||| |||||||||| |
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| T |
15077788 |
aatagaggcgtgagacagggagatccagtgtccccgctactcttttgtatagctgaagaagttttgagtagggggatcagtaagcttgttgaagatggca |
15077887 |
T |
|
| Q |
109 |
aggtgaaacaaatcaaagcttctagaaatactcttgtcccttcacactgtttttatgctgatgatctgatgatttattgtaaaggtaacttatcttctct |
208 |
Q |
| |
|
|||| || ||||| ||| ||||| | |||||| |||||||| || ||||||||||| || | ||| | |||||||||| || ||||||||| |
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|
| T |
15077888 |
aggtaaagcaaatgtcagcagctagacaagttcttgttccttcacattgcttttatgctgacgacttaatgttatattgtaaagcaaatacatcttctct |
15077987 |
T |
|
| Q |
209 |
tgattgtctt-aagacttgttcactgaatatgctgcaagttctggtcaaatcattaataataggaaatcttctattcatg |
287 |
Q |
| |
|
||| |||| |||||||||| | |||||||||| ||||||| |||||||| |||||||| ||||| ||||| |||| |
|
|
| T |
15077988 |
tgagcatcttaaagacttgtttgttaaatatgctgcttgttctggccaaatcatcaataatagaaaatcatctatacatg |
15078067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 32020312 - 32020382
Alignment:
| Q |
11 |
tagaggagtgagacagggggacccattgtcccctcttttattttgcatagctgaggaggttttaagtagag |
81 |
Q |
| |
|
|||||| ||||||||||| ||||| || |||||||||||||| ||| | ||||| || ||||| ||||||| |
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|
| T |
32020312 |
tagaggggtgagacagggagaccctttatcccctcttttattctgcctggctgaagatgttttgagtagag |
32020382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 14141668 - 14141605
Alignment:
| Q |
10 |
atagaggagtgagacagggggacccattgtcccctcttttattttgcatagctgaggaggtttt |
73 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| | ||||| ||||| ||||| || ||||| |
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|
| T |
14141668 |
atagaggagtgagacagggggacccattgtcacctttattattctgcattgctgaagatgtttt |
14141605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 15801562 - 15801510
Alignment:
| Q |
144 |
gtcccttcacactgtttttatgctgatgatctgatgatttattgtaaaggtaa |
196 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
15801562 |
gtcccttctcactccttttatgctgatgatttgatgatatattgtaaaggtaa |
15801510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 15801694 - 15801626
Alignment:
| Q |
12 |
agaggagtgagacagggggacccattgtcccctcttttattttgcatagctgaggaggttttaagtaga |
80 |
Q |
| |
|
||||| ||||||||||| ||||| || |||||||| ||||||||||| |||| |||||| |||||||| |
|
|
| T |
15801694 |
agaggggtgagacagggagaccccttatcccctctcttattttgcattactgaagaggttataagtaga |
15801626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 30219914 - 30219984
Alignment:
| Q |
11 |
tagaggagtgagacagggggacccattgtcccctcttttattttgcatagctgaggaggttttaagtagag |
81 |
Q |
| |
|
|||||| ||||||||||| ||||| || |||||||||||||| ||| | ||||| || ||||| ||||||| |
|
|
| T |
30219914 |
tagaggggtgagacagggagaccctttatcccctcttttattctgcctggctgaagatgttttgagtagag |
30219984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 17629975 - 17629905
Alignment:
| Q |
11 |
tagaggagtgagacagggggacccattgtcccctcttttattttgcatagctgaggaggttttaagtagag |
81 |
Q |
| |
|
|||||| ||||||||||| ||||| || |||||||||||||| ||| | ||||| || ||||| ||||||| |
|
|
| T |
17629975 |
tagaggggtgagacagggagaccctttatcccctcttttattctgcctggctgaagatgttttgagtagag |
17629905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 20751080 - 20751034
Alignment:
| Q |
36 |
ttgtcccctcttttattttgcatagctgaggaggttttaagtagagg |
82 |
Q |
| |
|
|||||||||||||| |||||||| || || ||||||||||||||||| |
|
|
| T |
20751080 |
ttgtcccctcttttgttttgcattgcagaagaggttttaagtagagg |
20751034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 128236 - 128285
Alignment:
| Q |
147 |
ccttcacactgtttttatgctgatgatctgatgatttattgtaaaggtaa |
196 |
Q |
| |
|
|||||||||| ||||||||| |||||| |||||||||||| |||||||| |
|
|
| T |
128236 |
ccttcacactctttttatgcagatgatatgatgatttatttaaaaggtaa |
128285 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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