View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1241_low_30 (Length: 264)
Name: NF1241_low_30
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1241_low_30 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 28 - 264
Target Start/End: Original strand, 3592590 - 3592826
Alignment:
| Q |
28 |
caattagaactacaacctacccagcacaaaaaatggataaaagccatgaagacgaaatatgattgtcatttcttaaaataagcatagtaacttcaatgtt |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3592590 |
caattagaactacaacctacccagcacaaaaaatggataaaagccatgaagacgaaatatgattgtcatttcttaaaataagcatagcaacttcaatgtt |
3592689 |
T |
|
| Q |
128 |
atatgttnnnnnnnttatgaacgtgaaactacaaaccaacacagaaacaaatcagctataaatgatttgaatttgttgactttggagtacaattgtttta |
227 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||| ||||||||| |
|
|
| T |
3592690 |
atatgttaaaaaaattatgaacctgaaactacaaaccaacacagaaccaaatcagctataaatgatttgaatttgttgacattcgagtactattgtttta |
3592789 |
T |
|
| Q |
228 |
ttttaactaaaaaagaatattaatggaactagtatca |
264 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3592790 |
ttttaactaaaaaagaatactaatggaactagtatca |
3592826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University