View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1241_low_34 (Length: 252)

Name: NF1241_low_34
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1241_low_34
NF1241_low_34
[»] chr1 (7 HSPs)
chr1 (51-224)||(5245996-5246169)
chr1 (48-121)||(13954533-13954606)
chr1 (48-118)||(33667265-33667335)
chr1 (48-121)||(33663412-33663485)
chr1 (48-121)||(33666885-33666958)
chr1 (50-116)||(33662121-33662187)
chr1 (1-35)||(5245944-5245978)
[»] chr2 (7 HSPs)
chr2 (48-123)||(37161655-37161730)
chr2 (48-122)||(31972619-31972693)
chr2 (48-121)||(10111028-10111101)
chr2 (48-121)||(37341586-37341659)
chr2 (48-121)||(42614461-42614534)
chr2 (48-121)||(43588000-43588073)
chr2 (50-95)||(13188325-13188370)
[»] chr4 (3 HSPs)
chr4 (48-122)||(5845013-5845087)
chr4 (48-121)||(15639312-15639385)
chr4 (72-122)||(5861850-5861900)
[»] chr8 (3 HSPs)
chr8 (48-121)||(14717349-14717422)
chr8 (48-121)||(26443335-26443408)
chr8 (48-121)||(30735620-30735693)
[»] chr7 (1 HSPs)
chr7 (48-121)||(41038013-41038086)
[»] chr5 (9 HSPs)
chr5 (48-121)||(18174116-18174189)
chr5 (48-121)||(19347485-19347558)
chr5 (48-121)||(19699892-19699965)
chr5 (48-121)||(20016629-20016702)
chr5 (48-121)||(33972109-33972182)
chr5 (48-121)||(33451010-33451083)
chr5 (48-122)||(43292290-43292363)
chr5 (48-121)||(9121322-9121394)
chr5 (48-121)||(24464471-24464543)
[»] chr3 (2 HSPs)
chr3 (48-121)||(4032683-4032756)
chr3 (48-121)||(30649768-30649841)
[»] chr6 (1 HSPs)
chr6 (49-117)||(1335341-1335409)


Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 51 - 224
Target Start/End: Original strand, 5245996 - 5246169
Alignment:
Q  51 tagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagcatttcatacaatggcagtaatcataaaat 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5245996 tagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagcatttcatacaatggcagtaatcataaaat 5246095  T
Q  151 aaagaatttccaataggtctcgtttatttcaattatctattatggaaaattgttagatattataagcaaaatat 224  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5246096 aaagaatgtccaataggtctcgtttatttcaattatctattatggaaaattgttagatattataagcaaaatat 5246169  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 13954606 - 13954533
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13954606 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 13954533  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 33667265 - 33667335
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattcc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33667265 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaacccactgagctattcc 33667335  T

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Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 33663412 - 33663485
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 121  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  33663412 cgctagaaggaggggttgaacctccgacctcgtggttaacagccacacgctctaacccactgagctattccagc 33663485  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 33666885 - 33666958
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 121  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||| ||||||||||| ||||||||||||||||    
T  33666885 cgctaaaaggaggggttgaacctctgaccttgtggttaacaaccatacgctctaacccactgagctattccagc 33666958  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 33662121 - 33662187
Alignment:
Q  50 ctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctatt 116  Q
    |||| ||||||||||||||||||||||||||||||||   ||||||| ||||||| |||||||||||    
T  33662121 ctaggaggaggggttgaacctccgaccttgtggttaaggtccacacgttctaacccactgagctatt 33662187  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 5245944 - 5245978
Alignment:
Q  1 aatcattaatcaattgattattaggcacagcagga 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  5245944 aatcattaattaattgattattaggcacagcagga 5245978  T

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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 37161655 - 37161730
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagcat 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37161655 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagcat 37161730  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 31972619 - 31972693
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagca 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31972619 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagca 31972693  T

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Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 10111101 - 10111028
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10111101 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 10111028  T

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Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 37341659 - 37341586
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37341659 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 37341586  T

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Target: chr2; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 42614534 - 42614461
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42614534 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 42614461  T

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Target: chr2; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 43588000 - 43588073
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43588000 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 43588073  T

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Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 13188370 - 13188325
Alignment:
Q  50 ctagaaggaggggttgaacctccgaccttgtggttaacagccacac 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  13188370 ctagaaggaggggttgaacctccgaccttgtggttaacagccacac 13188325  T

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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 5845013 - 5845087
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagca 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5845013 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagca 5845087  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 15639385 - 15639312
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15639385 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 15639312  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 5861850 - 5861900
Alignment:
Q  72 cgaccttgtggttaacagccacacgctctaaccaactgagctattccagca 122  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5861850 cgaccttgtggttaacagccacacgctctaactaactgagctattccagca 5861900  T

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Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 14717422 - 14717349
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14717422 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 14717349  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 26443408 - 26443335
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26443408 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 26443335  T

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Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 30735693 - 30735620
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 121  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30735693 cgctagaaggaggggtcgaacctccgaccttgtggttaacagccacacgctctaaccatctgagctattccagc 30735620  T

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Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 41038086 - 41038013
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41038086 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 41038013  T

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Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 18174189 - 18174116
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18174189 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 18174116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 19347485 - 19347558
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19347485 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 19347558  T

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Target: chr5; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 19699892 - 19699965
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19699892 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 19699965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 20016702 - 20016629
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016702 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 20016629  T

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Target: chr5; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 33972109 - 33972182
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33972109 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 33972182  T

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Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 33451010 - 33451083
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 121  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33451010 cgctagaaggagggattgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 33451083  T

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Target: chr5; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 43292290 - 43292363
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagca 122  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43292290 cgctagaaggaggg-ttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagca 43292363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 9121322 - 9121394
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 121  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9121322 cgctagaaggaggggttgaacctcc-accttgtggttaacagccacacgctctaaccaactgagctattccagc 9121394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 24464471 - 24464543
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 121  Q
    ||||| ||||| |||||||||||| |||||||||||| | |||||||| | |||||||||||||||||||||||    
T  24464471 cgctaaaaggaagggttgaacctctgaccttgtggtt-agagccacacacactaaccaactgagctattccagc 24464543  T

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Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 4032683 - 4032756
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4032683 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 4032756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 30649768 - 30649841
Alignment:
Q  48 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30649768 cgctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattccagc 30649841  T

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Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 1335341 - 1335409
Alignment:
Q  49 gctagaaggaggggttgaacctccgaccttgtggttaacagccacacgctctaaccaactgagctattc 117  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||    
T  1335341 gctagaaggaggggttgaacctccaaccttgtggttaacaaccacacactctaaccaactgagctattc 1335409  T

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