View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1241_low_4 (Length: 502)
Name: NF1241_low_4
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1241_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 333 - 491
Target Start/End: Original strand, 42689208 - 42689366
Alignment:
| Q |
333 |
tctcgtttgccatccatttcaaagcatactctgttctcccatccactgttggctcccagtctccgacgtcctccctaaaagttgctagacaaggtattaa |
432 |
Q |
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| T |
42689208 |
tctcgtttgccatccatttcaaagcatactctgttctcccatccattgttggctcccagtctccgacgtcctccctaaaagttgctagacaaggtattaa |
42689307 |
T |
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| Q |
433 |
actttagtttgagtctcatgctattataactgtctatgtttagtttctttgtgtagaat |
491 |
Q |
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| T |
42689308 |
actttagtttgagtctcatgctgttataactgtctatgtttagtttctttgtgtagaat |
42689366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 87 - 230
Target Start/End: Original strand, 42688988 - 42689131
Alignment:
| Q |
87 |
ggtattaggagtttgtaatatctaatttttctaggattcatattcaagacaaaactatagacatcttgcaattctcatataatgaaaagaggaattaact |
186 |
Q |
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| T |
42688988 |
ggtattaggagtttgtaatatctaatttttctaggattcatattcaagacaaaactatagacatcttgcaattctcatataatgaaaagaggaatttact |
42689087 |
T |
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| Q |
187 |
ctgatatatgatggtagagtagaaacggtcctatgtgattgtga |
230 |
Q |
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| T |
42689088 |
ctgatatatgatggtagagtagaaacggtcctatgtgattgtga |
42689131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 42689147 - 42689191
Alignment:
| Q |
215 |
tcctatgtgattgtgattttccctatggccgcccaaataggctgt |
259 |
Q |
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| T |
42689147 |
tcctatgtgattgtgattttccctatggccgcccaaataggctgt |
42689191 |
T |
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