View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1241_low_41 (Length: 250)
Name: NF1241_low_41
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1241_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 5245690 - 5245452
Alignment:
| Q |
1 |
gccgcaatttgataagtactatatattcacacaacttaaatctgcacagttctcttgaagaagcttgcaggacaatacttttgtggaaggtaaatgaaga |
100 |
Q |
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| T |
5245690 |
gccgcaatttgataggtactatatattcacacaacttaaatctgcacagttctcttgaagaagcttgcaggacaatacttttgtggaagggaaatgaaga |
5245591 |
T |
|
| Q |
101 |
caaaacgagcatggtcgattgccgcaatctctttaaaagaatctgaacaaatgttttgttccagatatttcattggtattgttacaacagctaccttcca |
200 |
Q |
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| T |
5245590 |
caaaacgagcatggtcgattgccgctatctctttaaaagaatctgaacaaatgttttgttccagatatttcattggtattgttacaacagctaccttcca |
5245491 |
T |
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| Q |
201 |
aatatatccagtcaattatgcataaaggaatcaacagct |
239 |
Q |
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||||||||||||||||||||||| |||||| |||||||| |
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| T |
5245490 |
aatatatccagtcaattatgcatgaaggaagcaacagct |
5245452 |
T |
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