View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1241_low_42 (Length: 250)
Name: NF1241_low_42
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1241_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 1864729 - 1864501
Alignment:
| Q |
1 |
ttagtcagcagtccaacaggtaacatctaggaacattgatctgcctttctttctccctctctctcgaaaatttaaagtggcaatatagaaaacttagaat |
100 |
Q |
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| T |
1864729 |
ttagtcagcagtc-aataggtaacatttaggaacattgatctgcctctttttttc----tttcttgaaaattaaaagtggcaatatagaaaacttagaat |
1864635 |
T |
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| Q |
101 |
attttttatgactaagttatggttgacgagaacttagaatatttttgttgtaagatataaaattatttgcaaaaagatgaagttttcaaatttttctaaa |
200 |
Q |
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| T |
1864634 |
attttttatgactaagttatggttgacgaggacttagaatatttttgttgtaagatataaaattatttgcaaaaagatgaagttttcaaatttttctaaa |
1864535 |
T |
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| Q |
201 |
ccagccaattatttttaaaatagtaattaagcaa |
234 |
Q |
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| T |
1864534 |
ccagccaattatttttaaaataataattaagcaa |
1864501 |
T |
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