View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1241_low_44 (Length: 237)
Name: NF1241_low_44
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1241_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 21433749 - 21433970
Alignment:
| Q |
1 |
aaaggtgagtgcgatgccagtttctgacttgtgttttctgaattatgtaattggaatggttagtgtagtgatagttaatctatgaacaatttcaaaatat |
100 |
Q |
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| T |
21433749 |
aaaggtgagtgcgctgctagtttctgacttgttttttctgaattatgtaattggaatggttagtgtagtggtagttaatctatgaacaatttcaaaatat |
21433848 |
T |
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| Q |
101 |
acttctttttacctatacaaattgacaaattaaacacagttgtataatatgaatcaaagaactctatagtcatatgaaatgcaaatgtaaaactgatttg |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21433849 |
acttctttttacctatacaaatggacaaattaaacacaattgtataatatgaatcaaagaactctatagtcatatgaaatgcaaatgtaaaactgatttg |
21433948 |
T |
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| Q |
201 |
gtgccctatcattggaagtttg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
21433949 |
gtgccctatcattggaagtttg |
21433970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 27152720 - 27152895
Alignment:
| Q |
1 |
aaaggtgagtgcgatgccagtttctgacttgtgttttctgaattatgtaattggaatggttagtgtagtgatagttaatctatga-----acaatttcaa |
95 |
Q |
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|||||||||||| ||| ||||||||| | || ||||||||||||| |||||||||||||| ||| ||||||||||||||| | ||| |||| |
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| T |
27152720 |
aaaggtgagtgcactgctagtttctgattggttttttctgaattatctaattggaatggttcgtg-----atagttaatctatgaggatgaaaatctcaa |
27152814 |
T |
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| Q |
96 |
aatatacttctttttacctatacaaattgacaaattaaacacagttgtataatatgaatcaaagaactctatagtcatatg |
176 |
Q |
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|| || ||||||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||| ||||| ||||||| |
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| T |
27152815 |
aacatttttctttttacctatatgaattaacaaactaaacacaattgtataatatgaatcaaagaacgctataatcatatg |
27152895 |
T |
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