View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1241_low_45 (Length: 237)
Name: NF1241_low_45
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1241_low_45 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 49671488 - 49671261
Alignment:
| Q |
10 |
tatacatcactcttgctagtgagctggtagcattgatgatattctggatcaacataacccggtgtcccttgtggcgccgtggatgcatgggtgatatcga |
109 |
Q |
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| T |
49671488 |
tatacatcactcttgctagtaagctggtagcattggtgatattctggatcaacataacccggtgtcccttgtggtgccgtggaagcatgggtgatatcga |
49671389 |
T |
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| Q |
110 |
gggggaatagccttgaaagaccaaaatctccaactttgacactgaagttatctgtgacgagaatgtttttggttttcacatcacggtggatgatgcctga |
209 |
Q |
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| T |
49671388 |
gggggaatagccttgaaagaccaaaatctccaactttgacactgaagttatctgtgaggagaatgtttttggtttttacgtcacggtggatgatgcctga |
49671289 |
T |
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| Q |
210 |
agcatgcagataagccaatgagcttgct |
237 |
Q |
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| T |
49671288 |
agcatgcagataagccaatgagcttgct |
49671261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 49667520 - 49667299
Alignment:
| Q |
6 |
actatatacatcactcttgctagtgagctggtagcattgatgatattctggatcaacataacccggtgtcccttgtggcgccgtggatgcatgggtgata |
105 |
Q |
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| T |
49667520 |
actatatacatcactcttgctagtaagctgataaaattggtgatactcggggtcaaggtaacctggtgttccttgtggagctgtggagacatgagtggca |
49667421 |
T |
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| Q |
106 |
tcgagggggaatagccttgaaagaccaaaatctccaactttgacactgaagttatctgtgacg-agaatgtttttggttttcacatcacggtggatgatg |
204 |
Q |
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| T |
49667420 |
tcctcggggaatagtcttgaaaggccaaaatctgcaactttaacaccaaaatt-gccgtcaagaagtatgttgctggttttcacgtcacggtgaatgatc |
49667322 |
T |
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| Q |
205 |
cctgaagcatgcagataagccaa |
227 |
Q |
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| T |
49667321 |
ccagaagcatggagataagccaa |
49667299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 49692591 - 49692531
Alignment:
| Q |
169 |
agaatgtttttggttttcacatcacggtggatgatgcctgaagcatgcagataagccaatg |
229 |
Q |
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| T |
49692591 |
agaatgttggtggttttgacatcacggtgaatgatgtcggaagcatgtagataagccaatg |
49692531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 49675529 - 49675470
Alignment:
| Q |
168 |
gagaatgtttttggttttcacatcacggtggatgatgcctgaagcatgcagataagccaa |
227 |
Q |
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| T |
49675529 |
gagaatgttgtttgttttcacatcacggtgaatgatttcagaagcatggagataagccaa |
49675470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 49675684 - 49675605
Alignment:
| Q |
13 |
acatcactcttgctagtgagctggtagcattgatgatattctggatcaacataacccggtgtcccttgtggcgccgtgga |
92 |
Q |
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| T |
49675684 |
acatcactcttgcttgtaagcctgtagcattgatgatattccggatccatatatcccggggttccttgtggagctgtgga |
49675605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 22783796 - 22783729
Alignment:
| Q |
7 |
ctatatacatcactcttgctagtgagctggtagcattgatgatattctggatcaacataacccggtgt |
74 |
Q |
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| T |
22783796 |
ctatatacatcgctcttgtttgttagctggtagcataaacgatattctggatcaacatagcctggtgt |
22783729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 33644466 - 33644506
Alignment:
| Q |
46 |
tgatattctggatcaacataacccggtgtcccttgtggcgc |
86 |
Q |
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| T |
33644466 |
tgatattgtggatcaacataacccggagtcccttgaggcgc |
33644506 |
T |
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