View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1241_low_48 (Length: 220)
Name: NF1241_low_48
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1241_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 51 - 202
Target Start/End: Complemental strand, 51035103 - 51034953
Alignment:
| Q |
51 |
gttacactttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcggttacgcctttaatctattggtttc |
150 |
Q |
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| T |
51035103 |
gttacactttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcggttac-actttaatctattggtttc |
51035005 |
T |
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| Q |
151 |
aaaagtaactattatctgtctctcataatataaacctctttttcattcccct |
202 |
Q |
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| T |
51035004 |
aaaagtaactattatctgtctctcatgatataaacctctttttcattcccct |
51034953 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 10208510 - 10208431
Alignment:
| Q |
51 |
gttacactttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcggttac |
130 |
Q |
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| T |
10208510 |
gttacactttattgttgttctctaaagcaatgattgctattaaaaattgagaatcaaacatttgcgatttgagcggttac |
10208431 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 48118336 - 48118415
Alignment:
| Q |
51 |
gttacactttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcggttac |
130 |
Q |
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| T |
48118336 |
gttatactttattgttgttctctaaagcaatgattgctattaaaaattgagaatgaaacatttgtgatctgagcggttac |
48118415 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 40883345 - 40883261
Alignment:
| Q |
57 |
ctttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcggttacgcctttaatct |
141 |
Q |
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| T |
40883345 |
ctttattgttgttctctaaagcaatggttgcttttaaaaattgagaatggaacatctgtgatttgagcagttacaactttaatct |
40883261 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 33357998 - 33357922
Alignment:
| Q |
54 |
acactttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcggttac |
130 |
Q |
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||||||||||||||||||| ||| ||| |||||| |||||||| ||||||| |||| | |||||||||||||||| |
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| T |
33357998 |
acactttattgtttttctcgaaagcaatgattgctgataaaaattgagaatgaaacatctttgatttgagcggttac |
33357922 |
T |
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