View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1241_low_49 (Length: 220)
Name: NF1241_low_49
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1241_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 21433766 - 21433970
Alignment:
| Q |
1 |
tagtttatgacttgttttttctgaattatgtaattggaatggttagtgtagtgatagttaatctatgaacaatttcaaaatatacttctttttacctata |
100 |
Q |
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| T |
21433766 |
tagtttctgacttgttttttctgaattatgtaattggaatggttagtgtagtggtagttaatctatgaacaatttcaaaatatacttctttttacctata |
21433865 |
T |
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| Q |
101 |
caaattgacaaattaaacacagttgtataatatgaatcaaagaactctatagtcatatgaaatgcaaatgtaaaactgatttggtgccctatcattggaa |
200 |
Q |
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| T |
21433866 |
caaatggacaaattaaacacaattgtataatatgaatcaaagaactctatagtcatatgaaatgcaaatgtaaaactgatttggtgccctatcattggaa |
21433965 |
T |
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| Q |
201 |
gtttg |
205 |
Q |
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||||| |
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| T |
21433966 |
gtttg |
21433970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 27152737 - 27152895
Alignment:
| Q |
1 |
tagtttatgacttgttttttctgaattatgtaattggaatggttagtgtagtgatagttaatctatga-----acaatttcaaaatatacttctttttac |
95 |
Q |
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| T |
27152737 |
tagtttctgattggttttttctgaattatctaattggaatggttcgtg-----atagttaatctatgaggatgaaaatctcaaaacatttttctttttac |
27152831 |
T |
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| Q |
96 |
ctatacaaattgacaaattaaacacagttgtataatatgaatcaaagaactctatagtcatatg |
159 |
Q |
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| T |
27152832 |
ctatatgaattaacaaactaaacacaattgtataatatgaatcaaagaacgctataatcatatg |
27152895 |
T |
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