View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1241_low_5 (Length: 487)
Name: NF1241_low_5
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1241_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 9 - 459
Target Start/End: Complemental strand, 16815955 - 16815488
Alignment:
| Q |
9 |
gattattctgggcaatgaaaggtggatacctgcataacaattatatgaaaataattttaaaactaaacataccattagtatatgtttggatacgttgagt |
108 |
Q |
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| T |
16815955 |
gattattttgggcaatgaaaggtggatacctgcataacaattatatgaaaataattttaaaactaaacataccactagtatatgtttggatacgttgagt |
16815856 |
T |
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| Q |
109 |
ttaacgaaatcacaaagtatctaacaaaagcttaagtatgtgtttcttaagatttcnnnnnnnatgatgtcacctcgaggaa----------------tg |
192 |
Q |
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| T |
16815855 |
ttaacgaaatcacaaggtatctaacaaaagcttaagcatgtgtttgtttgggtttctttttttatgatgtcacttcgaggaagttcatcttgaagtaatg |
16815756 |
T |
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| Q |
193 |
agatacc-cgcgttgagaggtaagctacatgtttccaaacagacactatctcttgtaggtttgggttggaaattccaaacataaaaccaaacgcactatt |
291 |
Q |
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| T |
16815755 |
agctacctcgctgtgagaggtaagctacatgtttccaaacagacactatttcttgtaggtttgggttggaaattccaaacataataccaaacgcactatt |
16815656 |
T |
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| Q |
292 |
aatttggagagacgaactaccacgcggtgagatatgagctaccgtgttcccaaatcggcgctatttcttgtaggttaggtttgtaaattccaaatttaaa |
391 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16815655 |
aatttggagagacgagctaccacgcggtgagatgtgagctaccgtgttcccaaatcggcgctatttcttgtaggttaggtttgtaaattccaaatttaaa |
16815556 |
T |
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| Q |
392 |
actaaacatactactagtacatgtttagacatgttgagtttgacgaaatcacagtagcactgtaattt |
459 |
Q |
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| T |
16815555 |
actaaacatactactagtacatgtttggacatgttgagtttgacgaaatcacagtagcaccgtaattt |
16815488 |
T |
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