View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1241_low_7 (Length: 469)
Name: NF1241_low_7
Description: NF1241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1241_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 239 - 457
Target Start/End: Original strand, 27127215 - 27127433
Alignment:
| Q |
239 |
catgtatctcaagtaaatagcttaaaaatacttgagattattgatatatataaatcttcatgtttgtaatttaaaaatcaataatattaatatccaagaa |
338 |
Q |
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| T |
27127215 |
catgtatctcaagtaaatagcttaaaaatacttgagattattgatatatataaatcttcatgtttgtaatttaaaaatcaataatattaatatccaagaa |
27127314 |
T |
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| Q |
339 |
attttttaatcaagtggagtaccaaactaaggaatgatatgtcttaaaacttaaactagagactgatgtgggacatatacttgccttctccaagttggta |
438 |
Q |
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| T |
27127315 |
aaaatttaatcaagtggagtaacaaactaaggaatgatatgtcttaaaacttaaactagagactgatgtgggacatatacttgccttctccaagttggta |
27127414 |
T |
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| Q |
439 |
cactgctcagagaaatctg |
457 |
Q |
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| T |
27127415 |
cactgctctgagaaatctg |
27127433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 90 - 247
Target Start/End: Original strand, 27126414 - 27126571
Alignment:
| Q |
90 |
agtgacaacgattgcttgcacaccaagaaagaggaaaactctacattatgagagtaagattatagagtttttataaaacttctattctatagatgagtga |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27126414 |
agtgacaacgattgcttgcacaccaagaaagaggaaaactctacattatgagagtaagattatagagtttttatgaaacttctattctatagatgagtga |
27126513 |
T |
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| Q |
190 |
agtgagtgcatcatactacacacaagtctcttgatagctaaggtggtgtcatgtatct |
247 |
Q |
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| T |
27126514 |
agtgagtgcatcatactacacacaagtctctttatagctaaggtggtgtcatgtatct |
27126571 |
T |
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