View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12420_high_1 (Length: 635)

Name: NF12420_high_1
Description: NF12420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12420_high_1
NF12420_high_1
[»] chr5 (8 HSPs)
chr5 (1-561)||(28842293-28842852)
chr5 (354-635)||(28858051-28858333)
chr5 (197-567)||(28876115-28876483)
chr5 (451-544)||(28905792-28905885)
chr5 (451-544)||(28942187-28942280)
chr5 (601-632)||(28842848-28842879)
chr5 (388-446)||(28903564-28903622)
chr5 (388-446)||(28939959-28940017)
[»] chr1 (2 HSPs)
chr1 (451-544)||(16660239-16660332)
chr1 (388-446)||(16658011-16658069)
[»] chr3 (1 HSPs)
chr3 (78-231)||(42817868-42818021)


Alignment Details
Target: chr5 (Bit Score: 509; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Original strand, 28842293 - 28842852
Alignment:
Q  1 caagttgggttaggtctgtggttcatgaggaatggacggctgaagttttcgatgaggagatgattagaggtggagagtatgttgaagaggagatggtgca 100  Q
    |||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28842293 caaggtgggttaggtcagtggttcacgaggaatggacggctgaagttttcgatgaggagatgattagaggtggagagtatgttgaagaggagatggtgca 28842392  T
Q  101 gatgcttcagattgcattggcttgtgtggcaaaggtggtagataataggccaacaatggaggaagttgttagaaacatagcggaaattaggcaccctgag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  28842393 gatgcttcagattgcattggcttgtgtggcaaaggtggtagataataggccaacaatggatgaagttgttagaaacatggcggaaattaggcaccctgag 28842492  T
Q  201 ttgaagaaaagtacatcttctgaatctgaatctaatgcataaacactatgatatgaagctttgattcccaagtcctgctacaactgagagaaagagacaa 300  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28842493 ttgaagaaaagtacatcttctgaatctgaatctaatgtataaacactatgacatgaagctttgattcccaagtcctgctacaactgagagaaagagacaa 28842592  T
Q  301 gaacactatgtataatgttttaaattccatatttcttagcgagaatactaatgtttcagatgcgccatgttatgttgggcattcgagttttcatgttgca 400  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28842593 gatcactatgtataatgttttaaattccatatttcttagcgagaatactaatgtttcagatgcgccatgttatgttgggcattcgagttttcatgttgca 28842692  T
Q  401 caatttttgtctgattcaaggatcatgatgctgactaaaccaaaggaagccattaacattttctttttcctttcaacagtctatcttgatttcttctttt 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28842693 caatttttgtctgattcaaggatcatgatgctgactaaaccaaaggaagccattaacattttctttttcctttcaacagtctatcttgctttcttctttt 28842792  T
Q  501 atgctatacttgtttattatgagatcattttatccatacaatttgaggaacctacacaaat 561  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  28842793 atgccatacttgtttattatgagatcattttatccatacaa-ttgagggacctacacaaat 28842852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 354 - 635
Target Start/End: Original strand, 28858051 - 28858333
Alignment:
Q  354 tttcagatgcgccatgttatgttgggcattcgagttttcatgttgcacaatttttgtctgattcaaggat-catgatgctgactaaaccaaaggaagcca 452  Q
    |||||||||| ||||||||| || ||||||| |||||||||||| ||||| ||||| || ||||| |||| |||||||||||  |||||||||| |||||    
T  28858051 tttcagatgctccatgttattttaggcattcaagttttcatgtttcacaacttttgactaattcagggattcatgatgctgatcaaaccaaaggcagcca 28858150  T
Q  453 ttaacattttctttttc-ctttcaacagtctatcttgatttcttcttttatgctatacttgtttattatgagatcattttatccatacaatttgaggaac 551  Q
    ||||||||||||||||  ||||||||||| ||||||  |||||  | ||||||| ||||||||||||||||||||||| ||| |||||||||| ||||||    
T  28858151 ttaacattttctttttttctttcaacagtatatcttactttctagtcttatgctttacttgtttattatgagatcattctattcatacaattt-aggaac 28858249  T
Q  552 ctacacaaatgataaggtagagtcgagggtaaatattaagaaacagtcccaaataagtagtttgattggtgacctaagggactc 635  Q
    |||| |||| ||||||||  |||| |||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||    
T  28858250 ctacgcaaaagataaggttaagtcaagggtaaatactaagaaacagtcccaaataagtagttcgattggtgatctaagggactc 28858333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 197 - 567
Target Start/End: Original strand, 28876115 - 28876483
Alignment:
Q  197 tgagttgaagaaaagtacatcttctgaatctgaatctaatgcataaacactatgatatgaagctttgattcccaagtcctgctacaactgagagaaagag 296  Q
    |||||||||||||| |||||||||||| ||||||||||||| || |||||||||| || ||| ||| ||| | || | ||| || ||| || || |||||    
T  28876115 tgagttgaagaaaaatacatcttctgagtctgaatctaatgtatgaacactatgacattaagtttttattgctaatttctgatataacggatagtaagag 28876214  T
Q  297 acaagaacactat-gtataatgttttaaatt-ccatatttcttagcgagaatactaatgtttcagatgcgccatgttatgttgggcattcgagttttcat 394  Q
    |   ||||||||  ||||||||||| || || |||  |||||| || ||||| ||||||||||| |||| ||||||||| || ||||||| | |||||||    
T  28876215 a---gaacactagagtataatgtttcaagtttccaagtttctttgcaagaattctaatgtttcaaatgctccatgttattttaggcattcaaattttcat 28876311  T
Q  395 gttgcacaatttttgtctgattcaaggatcatgatgctgactaaaccaaaggaagccattaacattttctttttcctttcaacagtctatcttgatttct 494  Q
    ||  ||||| |||||||| |||||  ||||| || | ||| ||||||||||||||  |||||||||||||||||||||| |||| | |||||||||||||    
T  28876312 gtaacacaacttttgtctaattcagtgatcacgagggtgattaaaccaaaggaagttattaacattttctttttccttttaacaatttatcttgatttct 28876411  T
Q  495 tcttttatgctatacttgtttattatgagatcattttatccatacaatttgaggaacctacacaaatgataag 567  Q
    ||| |||||||||||||||||||| | |||||||||||||||||||| ||||| || ||||||||| ||||||    
T  28876412 tctattatgctatacttgtttattttcagatcattttatccatacaa-ttgagaaatctacacaaacgataag 28876483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 451 - 544
Target Start/End: Original strand, 28905792 - 28905885
Alignment:
Q  451 cattaacattttctttttcctttcaacagtctatcttgatttcttcttttatgctatacttgtttattatgagatcattttatccatacaattt 544  Q
    |||||||||||||||||||||| ||| | | ||||| | |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||    
T  28905792 cattaacattttctttttccttacaaaaatttatctaggtttcttctattatgctatacatgtttattatgagatcattttgtccatacaattt 28905885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 451 - 544
Target Start/End: Original strand, 28942187 - 28942280
Alignment:
Q  451 cattaacattttctttttcctttcaacagtctatcttgatttcttcttttatgctatacttgtttattatgagatcattttatccatacaattt 544  Q
    |||||||||||||||||||||| ||| | | ||||| | |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||    
T  28942187 cattaacattttctttttccttacaaaaatttatctaggtttcttctattatgctatacatgtttattatgagatcattttgtccatacaattt 28942280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 601 - 632
Target Start/End: Original strand, 28842848 - 28842879
Alignment:
Q  601 caaataagtagtttgattggtgacctaaggga 632  Q
    ||||||||||||||||||||||||||||||||    
T  28842848 caaataagtagtttgattggtgacctaaggga 28842879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 388 - 446
Target Start/End: Original strand, 28903564 - 28903622
Alignment:
Q  388 ttttcatgttgcacaatttttgtctgattcaaggatcatgatgctgactaaaccaaagg 446  Q
    |||||||||||||||| |||||||| ||| |  ||||| |||||||| |||||||||||    
T  28903564 ttttcatgttgcacaacttttgtctaatttagagatcacgatgctgattaaaccaaagg 28903622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 388 - 446
Target Start/End: Original strand, 28939959 - 28940017
Alignment:
Q  388 ttttcatgttgcacaatttttgtctgattcaaggatcatgatgctgactaaaccaaagg 446  Q
    |||||||||||||||| |||||||| ||| |  ||||| |||||||| |||||||||||    
T  28939959 ttttcatgttgcacaacttttgtctaatttagagatcacgatgctgattaaaccaaagg 28940017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 451 - 544
Target Start/End: Original strand, 16660239 - 16660332
Alignment:
Q  451 cattaacattttctttttcctttcaacagtctatcttgatttcttcttttatgctatacttgtttattatgagatcattttatccatacaattt 544  Q
    |||||||||||||||||||||| ||| | | ||||| | |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||    
T  16660239 cattaacattttctttttccttacaaaaatttatctaggtttcttctattatgctatacatgtttattatgagatcattttgtccatacaattt 16660332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 388 - 446
Target Start/End: Original strand, 16658011 - 16658069
Alignment:
Q  388 ttttcatgttgcacaatttttgtctgattcaaggatcatgatgctgactaaaccaaagg 446  Q
    |||||||||||||||| |||||||| ||| |  ||||| |||||||| |||||||||||    
T  16658011 ttttcatgttgcacaacttttgtctaatttagagatcacgatgctgattaaaccaaagg 16658069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 78 - 231
Target Start/End: Original strand, 42817868 - 42818021
Alignment:
Q  78 tatgttgaagaggagatggtgcagatgcttcagattgcattggcttgtgtggcaaaggtggtagataataggccaacaatggaggaagttgttagaaaca 177  Q
    ||||| |||||||| |||||||||||||||||||||||| | || |||||||| |||     |||||  ||||| | |||||| |||| ||||||||  |    
T  42817868 tatgtcgaagaggaaatggtgcagatgcttcagattgcacttgcatgtgtggctaagacaccagatatgaggcctagaatggatgaagctgttagaatga 42817967  T
Q  178 tagcggaaattaggcaccctgagttgaagaaaagtacatcttctgaatctgaat 231  Q
    | | ||||||||   | |||||||| ||||| || ||||| |||||||||||||    
T  42817968 ttgaggaaattaaaaatcctgagtttaagaacagaacatcctctgaatctgaat 42818021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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