View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12420_high_3 (Length: 403)
Name: NF12420_high_3
Description: NF12420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12420_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 22 - 256
Target Start/End: Original strand, 2286042 - 2286276
Alignment:
| Q |
22 |
tcgaattcccattccatgcatgcatttgatattatcaatgccctagtcgaatccatacgaaacaagcacggaatctatataaatggtgatgaatacacat |
121 |
Q |
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| T |
2286042 |
tcgaattcccattccatgcatgcatttgatattatcaatgccctagtcgaatccatacgaaacaagcacggaatctatataaatggtgatgaatacacat |
2286141 |
T |
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| Q |
122 |
gaacatgtatatcatcaccattctcaaaaacgttttaatctacaatcaattgaatctatcttnnnnnnnttagtcaccgttttctggtcagcttttaaaa |
221 |
Q |
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| T |
2286142 |
gaacatgtatatcatcaccattctcaaaaacgttttaatctacaatcaattgaatctatcttaaaaaaattagtcaccattttctggtcagcttttaaaa |
2286241 |
T |
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| Q |
222 |
atgacaaaatgaatagaaaatcataatagaaattt |
256 |
Q |
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| T |
2286242 |
atgacaaaatggatagaaaatcataatagaaattt |
2286276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 252 - 388
Target Start/End: Original strand, 2286297 - 2286433
Alignment:
| Q |
252 |
aattttcataacctcaaaagttatacgttaaccaccactggtcaacatataatgttaccacatacttttgttacatattacattattcattccgtgtttc |
351 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2286297 |
aattttcataacctcaaacgttatacattaaccaccactggtcaacatataatgttaccacatacttttgttacatattacattattcattccgtgtttc |
2286396 |
T |
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| Q |
352 |
atatgcaaaaattattccaagcaaatgggaggacaca |
388 |
Q |
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| T |
2286397 |
atatgcaaaaattattccaagcaaatgggaggacaca |
2286433 |
T |
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