View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12420_high_6 (Length: 337)
Name: NF12420_high_6
Description: NF12420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12420_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 12 - 321
Target Start/End: Original strand, 41739793 - 41740084
Alignment:
| Q |
12 |
agagagtttgacaatttgtagatataaacgaggattgattcctctaaagtgagtaattagtattagtaaagtgagaaatcaatggttgatgcacatatta |
111 |
Q |
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| T |
41739793 |
agagagtttgacaatttgtagatataaacgaggattgattcctctaaagtgagtaattagtattagtgaagtgagaaatcaatggttgatgcacatatta |
41739892 |
T |
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| Q |
112 |
atttgcttatcacggttaatattcctcaatttactctctaaaatgaattgttcactttagaagcgcttgtccatatatacgcgcttgtccatatatacga |
211 |
Q |
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| T |
41739893 |
atttgcttatcacggttaatattcctcaatttcctctctaaaatgaattgttcactttagaagcgcttgtcc------------------atatatacga |
41739974 |
T |
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| Q |
212 |
ggtcagttttggagacctaatacacgaaagatagagcaaaattaatcactattcactacgaggagggaagaacaaaatcaagttgatacatagagtttac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41739975 |
ggtcagttttggagacctaatacacgaaagatagagcaaaattaatcactattcactacgaggagggaagaacaaaatcaagttgatacatagagtttac |
41740074 |
T |
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