View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12420_high_7 (Length: 333)
Name: NF12420_high_7
Description: NF12420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12420_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 109 - 318
Target Start/End: Original strand, 4153818 - 4154028
Alignment:
| Q |
109 |
ttctacccttgtactttattg-accaaatttcaaccttagtacttattcaactcttttcgtgagaattttcgtgttcagttcagtgccagggttgcattg |
207 |
Q |
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| T |
4153818 |
ttctacccttgtacatttttggaccaaatttcaaccttggtacttattcaactcttttcgtgagaattttcgtgttcagttcagtgccagggttgcattg |
4153917 |
T |
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| Q |
208 |
catgagatcatatttctgatgttaagtaaacttttaaccgtaataattatgagtcattttccaggatcagacaaataggtactgtgaaaataataaattc |
307 |
Q |
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| T |
4153918 |
catgagatcatatttctgatgttaagtaaacttttaaccgtaataattatgagtcattttccaggatcagacaaataggtactgtgaaaataataaattc |
4154017 |
T |
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| Q |
308 |
ttgcgtctgtg |
318 |
Q |
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| T |
4154018 |
ttgcgtctgtg |
4154028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 4153700 - 4153820
Alignment:
| Q |
19 |
tattacatatagaaaattattaaaaatgtaaatatatcgaagtttacatataagtgaattgaatttctatccttgtacnnnnnnnaggggttctaccctt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4153700 |
tattacatatagaaaattattaaaaatgtaaatatatcgaagtttacatataagtgaattgaatttctatccttgtactttttttaggggttctaccctt |
4153799 |
T |
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| Q |
119 |
gtactttattgaccaaatttc |
139 |
Q |
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| T |
4153800 |
gtactttattgaccaaatttc |
4153820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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