View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12420_low_1 (Length: 635)
Name: NF12420_low_1
Description: NF12420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12420_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 509; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Original strand, 28842293 - 28842852
Alignment:
| Q |
1 |
caagttgggttaggtctgtggttcatgaggaatggacggctgaagttttcgatgaggagatgattagaggtggagagtatgttgaagaggagatggtgca |
100 |
Q |
| |
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|||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28842293 |
caaggtgggttaggtcagtggttcacgaggaatggacggctgaagttttcgatgaggagatgattagaggtggagagtatgttgaagaggagatggtgca |
28842392 |
T |
|
| Q |
101 |
gatgcttcagattgcattggcttgtgtggcaaaggtggtagataataggccaacaatggaggaagttgttagaaacatagcggaaattaggcaccctgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
28842393 |
gatgcttcagattgcattggcttgtgtggcaaaggtggtagataataggccaacaatggatgaagttgttagaaacatggcggaaattaggcaccctgag |
28842492 |
T |
|
| Q |
201 |
ttgaagaaaagtacatcttctgaatctgaatctaatgcataaacactatgatatgaagctttgattcccaagtcctgctacaactgagagaaagagacaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28842493 |
ttgaagaaaagtacatcttctgaatctgaatctaatgtataaacactatgacatgaagctttgattcccaagtcctgctacaactgagagaaagagacaa |
28842592 |
T |
|
| Q |
301 |
gaacactatgtataatgttttaaattccatatttcttagcgagaatactaatgtttcagatgcgccatgttatgttgggcattcgagttttcatgttgca |
400 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28842593 |
gatcactatgtataatgttttaaattccatatttcttagcgagaatactaatgtttcagatgcgccatgttatgttgggcattcgagttttcatgttgca |
28842692 |
T |
|
| Q |
401 |
caatttttgtctgattcaaggatcatgatgctgactaaaccaaaggaagccattaacattttctttttcctttcaacagtctatcttgatttcttctttt |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28842693 |
caatttttgtctgattcaaggatcatgatgctgactaaaccaaaggaagccattaacattttctttttcctttcaacagtctatcttgctttcttctttt |
28842792 |
T |
|
| Q |
501 |
atgctatacttgtttattatgagatcattttatccatacaatttgaggaacctacacaaat |
561 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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|
| T |
28842793 |
atgccatacttgtttattatgagatcattttatccatacaa-ttgagggacctacacaaat |
28842852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 354 - 635
Target Start/End: Original strand, 28858051 - 28858333
Alignment:
| Q |
354 |
tttcagatgcgccatgttatgttgggcattcgagttttcatgttgcacaatttttgtctgattcaaggat-catgatgctgactaaaccaaaggaagcca |
452 |
Q |
| |
|
|||||||||| ||||||||| || ||||||| |||||||||||| ||||| ||||| || ||||| |||| ||||||||||| |||||||||| ||||| |
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| T |
28858051 |
tttcagatgctccatgttattttaggcattcaagttttcatgtttcacaacttttgactaattcagggattcatgatgctgatcaaaccaaaggcagcca |
28858150 |
T |
|
| Q |
453 |
ttaacattttctttttc-ctttcaacagtctatcttgatttcttcttttatgctatacttgtttattatgagatcattttatccatacaatttgaggaac |
551 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||| ||||| | ||||||| ||||||||||||||||||||||| ||| |||||||||| |||||| |
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| T |
28858151 |
ttaacattttctttttttctttcaacagtatatcttactttctagtcttatgctttacttgtttattatgagatcattctattcatacaattt-aggaac |
28858249 |
T |
|
| Q |
552 |
ctacacaaatgataaggtagagtcgagggtaaatattaagaaacagtcccaaataagtagtttgattggtgacctaagggactc |
635 |
Q |
| |
|
|||| |||| |||||||| |||| |||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
28858250 |
ctacgcaaaagataaggttaagtcaagggtaaatactaagaaacagtcccaaataagtagttcgattggtgatctaagggactc |
28858333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 197 - 567
Target Start/End: Original strand, 28876115 - 28876483
Alignment:
| Q |
197 |
tgagttgaagaaaagtacatcttctgaatctgaatctaatgcataaacactatgatatgaagctttgattcccaagtcctgctacaactgagagaaagag |
296 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||| || |||||||||| || ||| ||| ||| | || | ||| || ||| || || ||||| |
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|
| T |
28876115 |
tgagttgaagaaaaatacatcttctgagtctgaatctaatgtatgaacactatgacattaagtttttattgctaatttctgatataacggatagtaagag |
28876214 |
T |
|
| Q |
297 |
acaagaacactat-gtataatgttttaaatt-ccatatttcttagcgagaatactaatgtttcagatgcgccatgttatgttgggcattcgagttttcat |
394 |
Q |
| |
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| |||||||| ||||||||||| || || ||| |||||| || ||||| ||||||||||| |||| ||||||||| || ||||||| | ||||||| |
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|
| T |
28876215 |
a---gaacactagagtataatgtttcaagtttccaagtttctttgcaagaattctaatgtttcaaatgctccatgttattttaggcattcaaattttcat |
28876311 |
T |
|
| Q |
395 |
gttgcacaatttttgtctgattcaaggatcatgatgctgactaaaccaaaggaagccattaacattttctttttcctttcaacagtctatcttgatttct |
494 |
Q |
| |
|
|| ||||| |||||||| ||||| ||||| || | ||| |||||||||||||| |||||||||||||||||||||| |||| | ||||||||||||| |
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| T |
28876312 |
gtaacacaacttttgtctaattcagtgatcacgagggtgattaaaccaaaggaagttattaacattttctttttccttttaacaatttatcttgatttct |
28876411 |
T |
|
| Q |
495 |
tcttttatgctatacttgtttattatgagatcattttatccatacaatttgaggaacctacacaaatgataag |
567 |
Q |
| |
|
||| |||||||||||||||||||| | |||||||||||||||||||| ||||| || ||||||||| |||||| |
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|
| T |
28876412 |
tctattatgctatacttgtttattttcagatcattttatccatacaa-ttgagaaatctacacaaacgataag |
28876483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 451 - 544
Target Start/End: Original strand, 28905792 - 28905885
Alignment:
| Q |
451 |
cattaacattttctttttcctttcaacagtctatcttgatttcttcttttatgctatacttgtttattatgagatcattttatccatacaattt |
544 |
Q |
| |
|
|||||||||||||||||||||| ||| | | ||||| | |||||||| ||||||||||| ||||||||||||||||||||| |||||||||||| |
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|
| T |
28905792 |
cattaacattttctttttccttacaaaaatttatctaggtttcttctattatgctatacatgtttattatgagatcattttgtccatacaattt |
28905885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 451 - 544
Target Start/End: Original strand, 28942187 - 28942280
Alignment:
| Q |
451 |
cattaacattttctttttcctttcaacagtctatcttgatttcttcttttatgctatacttgtttattatgagatcattttatccatacaattt |
544 |
Q |
| |
|
|||||||||||||||||||||| ||| | | ||||| | |||||||| ||||||||||| ||||||||||||||||||||| |||||||||||| |
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|
| T |
28942187 |
cattaacattttctttttccttacaaaaatttatctaggtttcttctattatgctatacatgtttattatgagatcattttgtccatacaattt |
28942280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 601 - 632
Target Start/End: Original strand, 28842848 - 28842879
Alignment:
| Q |
601 |
caaataagtagtttgattggtgacctaaggga |
632 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
28842848 |
caaataagtagtttgattggtgacctaaggga |
28842879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 388 - 446
Target Start/End: Original strand, 28903564 - 28903622
Alignment:
| Q |
388 |
ttttcatgttgcacaatttttgtctgattcaaggatcatgatgctgactaaaccaaagg |
446 |
Q |
| |
|
|||||||||||||||| |||||||| ||| | ||||| |||||||| ||||||||||| |
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|
| T |
28903564 |
ttttcatgttgcacaacttttgtctaatttagagatcacgatgctgattaaaccaaagg |
28903622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 388 - 446
Target Start/End: Original strand, 28939959 - 28940017
Alignment:
| Q |
388 |
ttttcatgttgcacaatttttgtctgattcaaggatcatgatgctgactaaaccaaagg |
446 |
Q |
| |
|
|||||||||||||||| |||||||| ||| | ||||| |||||||| ||||||||||| |
|
|
| T |
28939959 |
ttttcatgttgcacaacttttgtctaatttagagatcacgatgctgattaaaccaaagg |
28940017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 451 - 544
Target Start/End: Original strand, 16660239 - 16660332
Alignment:
| Q |
451 |
cattaacattttctttttcctttcaacagtctatcttgatttcttcttttatgctatacttgtttattatgagatcattttatccatacaattt |
544 |
Q |
| |
|
|||||||||||||||||||||| ||| | | ||||| | |||||||| ||||||||||| ||||||||||||||||||||| |||||||||||| |
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|
| T |
16660239 |
cattaacattttctttttccttacaaaaatttatctaggtttcttctattatgctatacatgtttattatgagatcattttgtccatacaattt |
16660332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 388 - 446
Target Start/End: Original strand, 16658011 - 16658069
Alignment:
| Q |
388 |
ttttcatgttgcacaatttttgtctgattcaaggatcatgatgctgactaaaccaaagg |
446 |
Q |
| |
|
|||||||||||||||| |||||||| ||| | ||||| |||||||| ||||||||||| |
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|
| T |
16658011 |
ttttcatgttgcacaacttttgtctaatttagagatcacgatgctgattaaaccaaagg |
16658069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 78 - 231
Target Start/End: Original strand, 42817868 - 42818021
Alignment:
| Q |
78 |
tatgttgaagaggagatggtgcagatgcttcagattgcattggcttgtgtggcaaaggtggtagataataggccaacaatggaggaagttgttagaaaca |
177 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||| | || |||||||| ||| ||||| ||||| | |||||| |||| |||||||| | |
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| T |
42817868 |
tatgtcgaagaggaaatggtgcagatgcttcagattgcacttgcatgtgtggctaagacaccagatatgaggcctagaatggatgaagctgttagaatga |
42817967 |
T |
|
| Q |
178 |
tagcggaaattaggcaccctgagttgaagaaaagtacatcttctgaatctgaat |
231 |
Q |
| |
|
| | |||||||| | |||||||| ||||| || ||||| ||||||||||||| |
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|
| T |
42817968 |
ttgaggaaattaaaaatcctgagtttaagaacagaacatcctctgaatctgaat |
42818021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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