View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12420_low_5 (Length: 358)

Name: NF12420_low_5
Description: NF12420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12420_low_5
NF12420_low_5
[»] chr1 (9 HSPs)
chr1 (1-339)||(45543664-45544002)
chr1 (5-329)||(45543137-45543461)
chr1 (1-164)||(45543431-45543594)
chr1 (44-152)||(45543980-45544088)
chr1 (57-164)||(45543560-45543667)
chr1 (202-302)||(45530284-45530384)
chr1 (41-107)||(45544928-45544994)
chr1 (40-118)||(45548784-45548862)
chr1 (249-301)||(45548598-45548650)


Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 45544002 - 45543664
Alignment:
Q  1 aaatctttcaacgccgtcacaaatactgttggaaatcaatctgatgcaacagaaattcagaatgaatatcctcaagaaacaacatccgcagatatcaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45544002 aaatctttcaacgccgtcacaaatactgttggaaatcaatctgatgcaacagaaattcagaatgaatatcctcaagaaacaacatccgcagatatcaata 45543903  T
Q  101 gaaaccatgaaattccctcagaaactgaagaaactttcaacaccttcacaaacaatggtgaaaaacaagcatattatgacgagttagtggagacgcaatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  45543902 gaaaccatgaaattccctcagaaactgaagaaactttcaacaccttcacaaacgatggtgaaaaacaagcatattatgacgagttagtggagatgcaatc 45543803  T
Q  201 aaaaagtcacacagatgaagttgatgtaatctcttctggaacaaaagttgataaaactctcccttttgaaaatgatgaaacttctaagctcagtaatgat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45543802 aaaaagtcacacagatgaagttgatgtaatctcttctggaacaaaagttgataaaactctcccttttgaaaatgatgaaacttctaagctcagtaatgat 45543703  T
Q  301 ggtactagcactggtagtaatgagggaacgggaactcag 339  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  45543702 ggtactagcactggtagtaatgagggaactggaactcag 45543664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 5 - 329
Target Start/End: Complemental strand, 45543461 - 45543137
Alignment:
Q  5 ctttcaacgccgtcacaaatactgttggaaatcaatctgatgcaacagaaattcagaatgaatatcctcaagaaacaacatccgcagatatcaatagaaa 104  Q
    |||||||| || ||||| | | ||||| |||||||||||||||| |||||| ||||| |||||||||||||||||||  |||| ||||||||||||||||    
T  45543461 ctttcaacaccatcacatacaatgttgaaaatcaatctgatgcagcagaaactcagagtgaatatcctcaagaaacagtatccacagatatcaatagaaa 45543362  T
Q  105 ccatgaaattccctcagaaactgaagaaactttcaacacct-tcacaaacaatggtgaaaaacaagcatattatgacgagttagtggagacgcaatcaaa 203  Q
    ||||||||||||||  ||||| | |       || |||  | ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  45543361 ccatgaaattcccttcgaaacagta-------tcgacagatgtcacaaacactggtgaaaaacaagcatattatgacgagttagtggagatgcaatcaaa 45543269  T
Q  204 aagtcacacagatgaagttgatgtaatctcttctggaacaaaagttgataaaactctcccttttg------aaaatgatgaaacttctaagctcagtaat 297  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||      |||||||||||||||||||||||||||||    
T  45543268 aagtcacacagatgaagttgaagtaatctcttctggaacaaaagttgataaaactctccctcttgaaaataaaaatgatgaaacttctaagctcagtaat 45543169  T
Q  298 gatggtactagcactggtagtaatgagggaac 329  Q
    ||||| ||||||| ||||||||||||||||||    
T  45543168 gatggaactagcattggtagtaatgagggaac 45543137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 45543594 - 45543431
Alignment:
Q  1 aaatctttcaacgccgtcacaaatactgttggaaatcaatctgatgcaacagaaattcagaatgaatatcctcaagaaacaacatccgcagatatcaata 100  Q
    ||||||||||| ||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||  |||  ||||| |||| |    
T  45543594 aaatctttcaatgccgtcacaaacactgttgaaaatcaatctgaggcaacagaaattcagaatgaatatcctcaagaaacagtatcgtcagatgtcaaaa 45543495  T
Q  101 gaaaccatgaaattccctcagaaactgaagaaactttcaacaccttcacaaacaatggtgaaaa 164  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||    
T  45543494 gaaaccatgaaattccctcagaaactgaagaaactttcaacaccatcacatacaatgttgaaaa 45543431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 44 - 152
Target Start/End: Complemental strand, 45544088 - 45543980
Alignment:
Q  44 atgcaacagaaattcagaatgaatatcctcaagaaacaacatccgcagatatcaatagaaaccatgaaattccctcagaaactgaagaaactttcaacac 143  Q
    |||||||||||| |||||||||||||||||  |||||| ||||| |||||||||||| |||||||||||||||||||||||||||| || |||||||| |    
T  45544088 atgcaacagaaactcagaatgaatatcctcgggaaacagcatccacagatatcaatataaaccatgaaattccctcagaaactgaaaaatctttcaacgc 45543989  T
Q  144 cttcacaaa 152  Q
    | |||||||    
T  45543988 cgtcacaaa 45543980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 45543667 - 45543560
Alignment:
Q  57 tcagaatgaatatcctcaagaaacaacatccgcagatatcaatagaaaccatgaaattccctcagaaactgaagaaactttcaacaccttcacaaacaat 156  Q
    |||||||||||||||||  |||||| ||||| | |||||||||| |||||||||||||||||||||||||||| || |||||||  || ||||||||| |    
T  45543667 tcagaatgaatatcctcgggaaacagcatccacggatatcaatataaaccatgaaattccctcagaaactgaaaaatctttcaatgccgtcacaaacact 45543568  T
Q  157 ggtgaaaa 164  Q
    | ||||||    
T  45543567 gttgaaaa 45543560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 302
Target Start/End: Complemental strand, 45530384 - 45530284
Alignment:
Q  202 aaaagtcacacagatgaagttgatgtaatctcttctggaacaaaagttgataaaactctcccttttgaaaatgatgaaacttctaagctcagtaatgatg 301  Q
    |||||| ||| ||||| ||||||||||||| |||||| ||||| || || ||||||||||||  |||| ||| |||||||||||||||||| |||| |||    
T  45530384 aaaagttacaaagatggagttgatgtaatcacttctgcaacaatagctgttaaaactctcccacttgacaattatgaaacttctaagctcaataataatg 45530285  T
Q  302 g 302  Q
    |    
T  45530284 g 45530284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 45544994 - 45544928
Alignment:
Q  41 ctgatgcaacagaaattcagaatgaatatcctcaagaaacaacatccgcagatatcaatagaaacca 107  Q
    ||||||||||| ||| |||||||||||||||||| ||||||   ||| |||||||||||||| ||||    
T  45544994 ctgatgcaacaaaaactcagaatgaatatcctcaggaaacattgtccacagatatcaatagagacca 45544928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 45548862 - 45548784
Alignment:
Q  40 tctgatgcaacagaaattcagaatgaatatcctcaagaaacaacatccgcagatatcaatagaaaccatgaaattccct 118  Q
    |||||||||||||||| || ||||||||||||||| | ||||  ||||  | | |||||||||||||| |||| |||||    
T  45548862 tctgatgcaacagaaactccgaatgaatatcctcaggtaacagtatccaaaaacatcaatagaaaccaagaaaatccct 45548784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 45548650 - 45548598
Alignment:
Q  249 tgataaaactctcccttttgaaaatgatgaaacttctaagctcagtaatgatg 301  Q
    ||||||||||||||||  ||||||||| ||| ||||||||||| | |||||||    
T  45548650 tgataaaactctccctcctgaaaatgacgaagcttctaagctcggaaatgatg 45548598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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