View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12420_low_8 (Length: 249)
Name: NF12420_low_8
Description: NF12420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12420_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 84 - 234
Target Start/End: Original strand, 4155316 - 4155465
Alignment:
| Q |
84 |
gctcattttctaatgcactaatatagtatttatgaccataaatatgatgcaggcacagcatttcaaatttatacgttgcttggaacgtctcaccttagag |
183 |
Q |
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| T |
4155316 |
gctcattttctaatgcactaatatagtatt-atggccataaatatgatgcaggcacagcatttcaaatttatacgttgcttggaacgtctcaccttagag |
4155414 |
T |
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| Q |
184 |
aatagacataatgaatggtttaattgcttccaaatgactgggttgggcaca |
234 |
Q |
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| T |
4155415 |
aatagacataatgaatggtttaattgcttccaaatgactgggttgggcaca |
4155465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 231
Target Start/End: Original strand, 4160519 - 4160625
Alignment:
| Q |
125 |
atatgatgcaggcacagcatttcaaatttatacgttgcttggaacgtctcaccttagagaatagacataatgaatggtttaattgcttccaaatgactgg |
224 |
Q |
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| T |
4160519 |
atatgatgtaggaacatcatttcagatttatacactgcttggagagtctaaccatagagggtcgatataatgaatggtttaattgcatccgaatgactgg |
4160618 |
T |
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| Q |
225 |
gttgggc |
231 |
Q |
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| T |
4160619 |
gttgggc |
4160625 |
T |
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