View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12420_low_9 (Length: 248)

Name: NF12420_low_9
Description: NF12420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12420_low_9
NF12420_low_9
[»] chr7 (3 HSPs)
chr7 (11-176)||(40188122-40188287)
chr7 (32-133)||(23176880-23176981)
chr7 (15-77)||(46028474-46028536)
[»] chr5 (2 HSPs)
chr5 (15-105)||(27639455-27639545)
chr5 (16-133)||(41650524-41650640)
[»] chr4 (5 HSPs)
chr4 (32-132)||(50655054-50655154)
chr4 (31-105)||(4866793-4866867)
chr4 (22-105)||(45068131-45068214)
chr4 (32-133)||(23012319-23012420)
chr4 (15-103)||(30251406-30251494)
[»] chr3 (4 HSPs)
chr3 (11-133)||(34213142-34213264)
chr3 (14-107)||(26982035-26982128)
chr3 (32-81)||(1045402-1045451)
chr3 (32-75)||(2833336-2833379)
[»] chr2 (3 HSPs)
chr2 (15-136)||(41074538-41074658)
chr2 (22-133)||(43411519-43411630)
chr2 (32-78)||(10994447-10994493)
[»] chr1 (7 HSPs)
chr1 (15-136)||(52372668-52372789)
chr1 (11-136)||(25410548-25410673)
chr1 (14-130)||(44503936-44504052)
chr1 (32-107)||(13297609-13297684)
chr1 (14-133)||(40799648-40799767)
chr1 (32-78)||(51871218-51871264)
chr1 (15-103)||(21926617-21926704)
[»] scaffold0329 (1 HSPs)
scaffold0329 (16-133)||(18404-18521)
[»] chr8 (6 HSPs)
chr8 (15-136)||(42032731-42032852)
chr8 (22-133)||(42241207-42241318)
chr8 (14-136)||(41927017-41927139)
chr8 (22-105)||(34152025-34152108)
chr8 (17-107)||(24604837-24604927)
chr8 (14-57)||(38492761-38492804)
[»] chr6 (2 HSPs)
chr6 (32-136)||(52009-52113)
chr6 (29-112)||(9557368-9557451)
[»] scaffold0042 (1 HSPs)
scaffold0042 (22-83)||(83246-83307)


Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 40188287 - 40188122
Alignment:
Q  11 gaacctgtgggggataaagcaaaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtgcagctcg 110  Q
    |||||||||| |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40188287 gaacctgtggtggataaagcaaaactcatagcttggaagtggttcttgcctaagtgccctgctagttcttgcacttatcatgagtaggaggtgcagctcg 40188188  T
Q  111 tcttgtgttggcagcggtagggtgttttgagggggtgattgggtacgtgtgggggattggtgaggt 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40188187 tcttgtgttggcagcggtagggtgttttgagggggtgattgggtacgtgtgggggattggtgaggt 40188122  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 133
Target Start/End: Complemental strand, 23176981 - 23176880
Alignment:
Q  32 aaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtgcagctcgtcttgtgttggcagcggtagg 131  Q
    |||||||||||||||||| |||||||  |  |||| | ||||||||| |||| ||||||||||| ||||||||||| |||| | |||||||| || ||||    
T  23176981 aaactcttagcttggaagcggttccttgccaagtgtcatgctagttcatgcacttatcatgagttggaggtgcagcccgtcctatgttggcatcgatagg 23176882  T
Q  132 gt 133  Q
    ||    
T  23176881 gt 23176880  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 46028536 - 46028474
Alignment:
Q  15 ctgtgggggataaagcaaaactcttagcttggaagtggttcctgcctgagtgccctgctagtt 77  Q
    |||||| ||||| ||| ||||||||||||||||||||||||||| || |||| ||||||||||    
T  46028536 ctgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgtcctgctagtt 46028474  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 27639545 - 27639455
Alignment:
Q  15 ctgtgggggataaagcaaaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtgca 105  Q
    |||||| ||||| ||||||| |||||||||||||||||||| || || | || |||||||||||||||| |||||||||||||||||||||    
T  27639545 ctgtggtggatagagcaaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtaggaggtgca 27639455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 41650524 - 41650640
Alignment:
Q  16 tgtgggggataaagcaaaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtgcagctcgtcttg 115  Q
    ||||| ||||| ||| ||||||||||||||||||||||||||| || ||||| ||||||| || |||| ||| ||||||| || |||||| | |||| |     
T  41650524 tgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgctctgctagctcctgcacttaccatgagt-ggtggtgcaacccgtcctt 41650622  T
Q  116 tgttggcagcggtagggt 133  Q
    |||||||||| |||||||    
T  41650623 tgttggcagcagtagggt 41650640  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 50655154 - 50655054
Alignment:
Q  32 aaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtgcagctcgtcttgtgttggcagcggtagg 131  Q
    ||||||||||||||||||||||||||| || |||| ||||||||||||||| |||  ||||||| ||||||||| |  ||| | ||||||||||||||||    
T  50655154 aaactcttagcttggaagtggttcctggctaagtgtcctgctagttcttgctttttccatgagtgggaggtgcaacctgtcctttgttggcagcggtagg 50655055  T
Q  132 g 132  Q
    |    
T  50655054 g 50655054  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 4866793 - 4866867
Alignment:
Q  31 aaaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtgca 105  Q
    |||||||||||||||||||||||||||| || |||||| ||||||| |||||| ||||||||||| |||||||||    
T  4866793 aaaactcttagcttggaagtggttcctggctaagtgccttgctagtccttgcacttatcatgagtgggaggtgca 4866867  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 45068214 - 45068131
Alignment:
Q  22 ggataaagcaaaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtgca 105  Q
    ||||| ||| ||||||||||||||||||||||||||| || |||||||||  ||||| | || ||||||||||  |||||||||    
T  45068214 ggatagagctaaactcttagcttggaagtggttcctggctaagtgccctggcagttcctacacttatcatgagggggaggtgca 45068131  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 133
Target Start/End: Complemental strand, 23012420 - 23012319
Alignment:
Q  32 aaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtgcagctcgtcttgtgttggcagcggtagg 131  Q
    |||||||||| |||||| |||||| || || ||||   ||||||||  |||| ||||||||| | ||||||||||| |||| ||||||| || |||||||    
T  23012420 aaactcttagtttggaattggttcatggctaagtgttgtgctagtttctgcacttatcatgaatgggaggtgcagcacgtcctgtgttgacatcggtagg 23012321  T
Q  132 gt 133  Q
    ||    
T  23012320 gt 23012319  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 30251494 - 30251406
Alignment:
Q  15 ctgtgggggataaagcaaaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtg 103  Q
    |||||| ||||| ||  |||||||| ||||| |||||||||||| || |||||||||  |||||||||  |  |||||||| |||||||    
T  30251494 ctgtggtggatagagtgaaactcttggcttgaaagtggttcctggctaagtgccctggaagttcttgctctgttcatgagtgggaggtg 30251406  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 34213142 - 34213264
Alignment:
Q  11 gaacctgtgggggataaagcaaaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtgcagctcg 110  Q
    |||||||| | ||||| ||  |||||||||||||||||||||||| || || |||||| ||||||||| |||| |||||| ||||  |||||||||| ||    
T  34213142 gaacctgttgtggatagagtgaaactcttagcttggaagtggttcatggctaagtgccatgctagttcatgcacttatcacgagtgtgaggtgcagcccg 34213241  T
Q  111 tcttgtgttggcagcggtagggt 133  Q
    || |||||||||| || ||||||    
T  34213242 tcctgtgttggcaccgatagggt 34213264  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 26982128 - 26982035
Alignment:
Q  14 cctgtgggggataaagcaaaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtgcagc 107  Q
    ||||||| ||||| || ||||||||||||||||||||||||| || || |||||||||| ||||| ||||  |||||||||| |||||| ||||    
T  26982128 cctgtggtggatagagtaaaactcttagcttggaagtggttcttggctaagtgccctgcaagttcctgcacctatcatgagtgggaggttcagc 26982035  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 1045451 - 1045402
Alignment:
Q  32 aaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttg 81  Q
    ||||||| ||||||||||||||||||| || |||||||||||||||||||    
T  1045451 aaactctcagcttggaagtggttcctggctaagtgccctgctagttcttg 1045402  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 2833379 - 2833336
Alignment:
Q  32 aaactcttagcttggaagtggttcctgcctgagtgccctgctag 75  Q
    |||||||||||||||||||||||| || || |||||||||||||    
T  2833379 aaactcttagcttggaagtggttcatggctaagtgccctgctag 2833336  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 41074658 - 41074538
Alignment:
Q  15 ctgtgggggataaagcaaaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtgcagctcgtctt 114  Q
    |||||| ||| ||||| |||||||||||||| |||||||||||| || |||||||||||||| ||| || || |||||||| | ||||||||| |||  |    
T  41074658 ctgtggtggacaaagcgaaactcttagcttgaaagtggttcctggctaagtgccctgctagtcctt-cacttttcatgagtggaaggtgcagcccgttct 41074560  T
Q  115 gtgttggcagcggtagggtgtt 136  Q
    ||| ||||| ||||||||||||    
T  41074559 gtgctggcatcggtagggtgtt 41074538  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 43411519 - 43411630
Alignment:
Q  22 ggataaagcaaaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtgcagctcgtcttgtgttgg 121  Q
    ||||| ||| |||||||||||||| ||||| |||||| || |||| |||||||| || |||| ||||||||||| ||||||||||| |||| | |||||     
T  43411519 ggatagagcgaaactcttagcttgaaagtgtttcctggctaagtgtcctgctagctcctgcacttatcatgagtgggaggtgcagcccgtcctttgttga 43411618  T
Q  122 cagcggtagggt 133  Q
    ||| ||||||||    
T  43411619 cagtggtagggt 43411630  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 10994447 - 10994493
Alignment:
Q  32 aaactcttagcttggaagtggttcctgcctgagtgccctgctagttc 78  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||    
T  10994447 aaactcttagcttggaagtggttcctggctaagtgccctgctagttc 10994493  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 52372668 - 52372789
Alignment:
Q  15 ctgtgggggataaagcaaaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtgcagctcgtctt 114  Q
    |||||| ||||| ||| ||||||||||||| ||||||||||||| ||  ||||||||||||||| |||  || | |||||| ||||||||| | | || |    
T  52372668 ctgtggtggatagagcgaaactcttagcttagaagtggttcctggctaggtgccctgctagttcctgctctttttatgagtgggaggtgcaacccatcct 52372767  T
Q  115 gtgttggcagcggtagggtgtt 136  Q
     |||||||||||||||||||||    
T  52372768 ttgttggcagcggtagggtgtt 52372789  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 25410673 - 25410548
Alignment:
Q  11 gaacctgtgggggataaagcaaaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtgcagctcg 110  Q
    |||||||||  ||||| ||  ||||||||||||||||||||||||||| || ||| || ||||||||| |||  ||   |||||| ||||||||||| ||    
T  25410673 gaacctgtgatggatagagtgaaactcttagcttggaagtggttcctggctaagtaccttgctagttcctgctctttctatgagtgggaggtgcagcccg 25410574  T
Q  111 tcttgtgttggcagcggtagggtgtt 136  Q
    |||||||||| || ||||| ||||||    
T  25410573 tcttgtgttgccaacggtaaggtgtt 25410548  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 44504052 - 44503936
Alignment:
Q  14 cctgtgggggataaagcaaaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtgcagctcgtct 113  Q
    ||||||| ||||||||  || ||||||||||||||||||||| || || |||| | || |||||| |||  || |||||||| ||||||||||||||||     
T  44504052 cctgtggtggataaagtgaagctcttagcttggaagtggttcatgactaagtgtcgtggtagttcctgctcttttcatgagtgggaggtgcagctcgtcc 44503953  T
Q  114 tgtgttggcagcggtag 130  Q
    | || ||||| ||||||    
T  44503952 tttgctggcaccggtag 44503936  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 13297609 - 13297684
Alignment:
Q  32 aaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtgcagc 107  Q
    |||||||||||||| || |||||| || || |||| ||||||||||| |||| ||||||||||| |||||||||||    
T  13297609 aaactcttagcttgaaattggttcatggctaagtgtcctgctagttcctgcacttatcatgagtgggaggtgcagc 13297684  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 40799648 - 40799767
Alignment:
Q  14 cctgtgggggataaagcaaaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtgcagctcgtct 113  Q
    ||||||| ||||| ||  |||||||| ||||| |||| ||||||  || |||||  |||||||||||||  || |||||||| ||||||||||||||||     
T  40799648 cctgtggtggatagagtgaaactcttggcttgaaagttgttcctagctaagtgcattgctagttcttgctcttttcatgagtgggaggtgcagctcgtcc 40799747  T
Q  114 tgtgttggcagcggtagggt 133  Q
    | || ||||| |||||||||    
T  40799748 tttgctggcatcggtagggt 40799767  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 51871218 - 51871264
Alignment:
Q  32 aaactcttagcttggaagtggttcctgcctgagtgccctgctagttc 78  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||    
T  51871218 aaactcttagcttggaagtggttcctgactaagtgccctgctagttc 51871264  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 21926617 - 21926704
Alignment:
Q  15 ctgtgggggataaagcaaaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtg 103  Q
    |||||| ||||| ||  ||||||||||| ||||||||||| ||| || |||||||||||||||| ||   ||||||||||| |||||||    
T  21926617 ctgtggtggatagagtgaaactcttagcctggaagtggtt-ctggctaagtgccctgctagttcatgttcttatcatgagtgggaggtg 21926704  T

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Target: scaffold0329 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 18521 - 18404
Alignment:
Q  16 tgtgggggataaagcaaaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtgcagctcgtcttg 115  Q
    ||||| ||||| ||| |||||| ||| ||| ||||| |||  | || |||||||||||||||| |||| ||||||||||| ||||||||| | |||  ||    
T  18521 tgtggtggatagagcgaaactcatagtttgaaagtgattctgggctaagtgccctgctagttcctgcacttatcatgagtgggaggtgcaacccgttctg 18422  T
Q  116 tgttggcagcggtagggt 133  Q
    ||||||||||||||||||    
T  18421 tgttggcagcggtagggt 18404  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 42032731 - 42032852
Alignment:
Q  15 ctgtgggggataaagcaaaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtgcagctcgtctt 114  Q
    |||||| | ||| ||| ||||||||||||||||||||||||||| || |||||||||||| ||| |||   | | |||||| ||||||||| | |||| |    
T  42032731 ctgtggtgaatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctacttcctgctccttttatgagtgggaggtgcaacccgtcct 42032830  T
Q  115 gtgttggcagcggtagggtgtt 136  Q
     |||||||| ||||||||||||    
T  42032831 ttgttggcaacggtagggtgtt 42032852  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 42241318 - 42241207
Alignment:
Q  22 ggataaagcaaaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtgcagctcgtcttgtgttgg 121  Q
    ||||||||| ||||||||||||||||||||||||||| |  || || || ||||||| |||| ||| | ||||| ||||||||| | |||| |||| |||    
T  42241318 ggataaagcgaaactcttagcttggaagtggttcctggcgaagcgctctactagttcctgcacttaccttgagtgggaggtgcaacccgtcctgtgctgg 42241219  T
Q  122 cagcggtagggt 133  Q
    || || ||||||    
T  42241218 catcgatagggt 42241207  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 136
Target Start/End: Original strand, 41927017 - 41927139
Alignment:
Q  14 cctgtgggggataaagcaaaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtgcagctcgtct 113  Q
    ||||||| ||||| ||| || |||||||||||||||||||||||| || |||||| ||| | ||| ||| |||   |||||| |||| |||| | | ||     
T  41927017 cctgtggtggatagagcgaatctcttagcttggaagtggttcctggctaagtgccgtgcaaattcctgctttttctatgagtgggagatgcaccccttcc 41927116  T
Q  114 tgtgttggcagcggtagggtgtt 136  Q
    |||||||||||| ||||||||||    
T  41927117 tgtgttggcagcagtagggtgtt 41927139  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 34152108 - 34152025
Alignment:
Q  22 ggataaagcaaaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtgca 105  Q
    ||||| ||| ||||||||||||||||||||||||||| || || |||||   ||||| |||| || |||||||| |||||||||    
T  34152108 ggatagagctaaactcttagcttggaagtggttcctggctaagcgccctagcagttcctgcacttttcatgagtgggaggtgca 34152025  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 24604837 - 24604927
Alignment:
Q  17 gtgggggataaagcaaaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtgcagc 107  Q
    |||| ||||| ||| |||||||||| ||| ||||||||| || || |||| |||||||||| || |  ||||||||||| |||||||||||    
T  24604837 gtggtggatagagcgaaactcttagattgaaagtggttcttggctaagtggcctgctagttttttctcttatcatgagtgggaggtgcagc 24604927  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 38492804 - 38492761
Alignment:
Q  14 cctgtgggggataaagcaaaactcttagcttggaagtggttcct 57  Q
    ||||||| ||||||||| |||||||||||||| |||||||||||    
T  38492804 cctgtggtggataaagcgaaactcttagcttgaaagtggttcct 38492761  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 52009 - 52113
Alignment:
Q  32 aaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgca-tttatcatgagtaggaggtgcagctcgtcttgtgttggcagcggtag 130  Q
    ||||||||||||||||||||||||||| || |||| | |||||||||||||| ||||| |||||| ||||||||| |   || |||||||||||||||||    
T  52009 aaactcttagcttggaagtggttcctggctaagtgtcttgctagttcttgcactttat-atgagtgggaggtgcaacatatcctgtgttggcagcggtag 52107  T
Q  131 ggtgtt 136  Q
     |||||    
T  52108 agtgtt 52113  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 9557451 - 9557368
Alignment:
Q  29 gcaaaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgcatttatcatgagtaggaggtgcagctcgtc 112  Q
    |||||| |||||||||||||||| |||||| || |||| |||||||| || |||| ||||||||||| ||||||||||| ||||    
T  9557451 gcaaaattcttagcttggaagtgattcctgactaagtgtcctgctagctcctgcacttatcatgagtgggaggtgcagcccgtc 9557368  T

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Target: scaffold0042 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 83307 - 83246
Alignment:
Q  22 ggataaagcaaaactcttagcttggaagtggttcctgcctgagtgccctgctagttcttgca 83  Q
    ||||||||  |||||||||||||||||||||||| ||||  |||| ||||||||||||||||    
T  83307 ggataaagtcaaactcttagcttggaagtggttcatgccgaagtgtcctgctagttcttgca 83246  T

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