View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12421_low_2 (Length: 220)
Name: NF12421_low_2
Description: NF12421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12421_low_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 3810832 - 3810613
Alignment:
| Q |
1 |
gggtgaattgtgtgaggtatgataaagacaggtgttacgtaagcagcaagtatgcaccacaatgctactaattttaggctgttgtgtgccagggtgatgc |
100 |
Q |
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| T |
3810832 |
gggtgaattgtgtgaggtatgataaagactggtgttacgtaagcagcaagtatgcaccacaatgctactaattttaggctgctgtgtgccagggtgatgc |
3810733 |
T |
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| Q |
101 |
tcttatcggaacgcctaaaacatatttttgagaggctcggccttgccaaatgcgtcattgctattattcctatgtatattgcagattggataaatatcac |
200 |
Q |
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| T |
3810732 |
tcttatcggaacgcctaaaacatatttttgagaggctcggccttgccaaacgcgtcattgctattattcctatgtatattgcagattggataaatatcac |
3810633 |
T |
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| Q |
201 |
agccatctccgaagcatacc |
220 |
Q |
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| T |
3810632 |
agccatctccgaagcatacc |
3810613 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 206
Target Start/End: Original strand, 41672783 - 41672925
Alignment:
| Q |
64 |
gctactaattttaggctgttgtgtgccagggtgatgctcttatcggaacgcctaaaacatatttttgagaggctcggccttgccaaatgcgtcattgcta |
163 |
Q |
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| T |
41672783 |
gctactagtttgaggatgttttgtaccaatgtgatgctcttatcagagcggcggtagcataattttgagaggcttggccttgccaaacgagtcagtgcta |
41672882 |
T |
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| Q |
164 |
ttattcctatgtatattgcagattggataaatatcacagccat |
206 |
Q |
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| T |
41672883 |
ttattccaagatatattgctgattgaataagtatcacagccat |
41672925 |
T |
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