View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12422_high_2 (Length: 358)
Name: NF12422_high_2
Description: NF12422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12422_high_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 44490229 - 44489892
Alignment:
| Q |
16 |
attcaccataatagaatcacctatactatagtcatgtgttgcacgaattgaactcaaatccaacacaaaccccaaccaaccactacatatataaattttg |
115 |
Q |
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| T |
44490229 |
attcaccataatagaatcacctata-----gtcatgtgttgcacgaattgaactcaaatccaacacaaaccccaaccaaccactacatatataaaatttg |
44490135 |
T |
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| Q |
116 |
aaatctagctagctctctttctatattgcaatattgcatgtcctttataacaatgggttggaaagccttccctattgctactacattctcaattttcttt |
215 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44490134 |
aaatctagatagctctctttctatattgcaatattgcatgtcctttataacaatgggttggaaagccttctctattgctactacattctcaattttcttt |
44490035 |
T |
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| Q |
216 |
ctccttccattctttgcatttctagctaccgcaaatgacactcttgtacctccagaaaccatttgtaaatcatcccaatatccatcttattgcacaaatc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44490034 |
ctccttccattctttgcatttctagctaccgcaaatgacacccttgtacctccagaaaccatttgtaaatcatcccaatatccatcttattgcacaaatc |
44489935 |
T |
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| Q |
316 |
tacttccaaaacaaaatgccaaagtccatgactttgctagatt |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44489934 |
tacttccaaaacaaaatgccaaagtccatgactttgctagatt |
44489892 |
T |
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