View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12422_high_3 (Length: 344)
Name: NF12422_high_3
Description: NF12422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12422_high_3 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 12 - 344
Target Start/End: Complemental strand, 50556556 - 50556218
Alignment:
| Q |
12 |
aatactattgaaaggatggttaaggttgttgatttgaactttgatggaaaagttgattttggtgagtttgaattgatgatgggataatactttaccagtt |
111 |
Q |
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| T |
50556556 |
aatacaattgaaaggatggttaaggttgttgatttgaactttgatggaaaagttgattttggtgagtttgaattgatgatgggataatactttaccagtt |
50556457 |
T |
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| Q |
112 |
tgttcattccttgattttagaatgtaataataattatcgatccctcaactgtaaactattaaattaagttaaattaaattgttttgatttatcacagtat |
211 |
Q |
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| T |
50556456 |
tgttcattccttgattttagaatgtaataataattattgatccctcaactgtaaactattaaattaagttaaattaaattgttttgatttatcacagtat |
50556357 |
T |
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| Q |
212 |
aattctatgatgaaaatgaattatgaa------gnnnnnnnnnnnnngcatcatctgcttacatcgatcttgattgcaatattgcagacaaatcccattt |
305 |
Q |
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| T |
50556356 |
aattctatgatgaaaatgaattatgaagtttttgttttttgttttttgcatcatctgcttacatcgatcttgattgcaatattgcagacaaatcccattt |
50556257 |
T |
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| Q |
306 |
agtatatatgtcatacatgattttttggttttaacaatc |
344 |
Q |
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| T |
50556256 |
agtatatatgtcatacatgattttttggttttaacaatc |
50556218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 50818070 - 50817957
Alignment:
| Q |
12 |
aatactattgaaaggatggttaaggttgttgatttgaactttgatggaaaagttgattttggtgagtttgaattgatgatgggataatactttaccagtt |
111 |
Q |
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| T |
50818070 |
aatacaattgaaaggatggttaaggttgttgttttgagcttatgtggaaaagttgattccggtgagtttgaattgatgatgggatagtactttaccagtc |
50817971 |
T |
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| Q |
112 |
tgttcattccttga |
125 |
Q |
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| T |
50817970 |
tgttcattccttga |
50817957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 50857794 - 50857907
Alignment:
| Q |
12 |
aatactattgaaaggatggttaaggttgttgatttgaactttgatggaaaagttgattttggtgagtttgaattgatgatgggataatactttaccagtt |
111 |
Q |
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| T |
50857794 |
aatacaattgaaaggatggttaaggttgttgttttgagcttatgtggaaaagttgattccggtgagtttgaattgatgatgggatagtactttaccagtc |
50857893 |
T |
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| Q |
112 |
tgttcattccttga |
125 |
Q |
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| T |
50857894 |
tgttcattccttga |
50857907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 50817921 - 50817877
Alignment:
| Q |
280 |
tgcaatattgcagacaaatcccatttagtatatatgtcatacatg |
324 |
Q |
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| T |
50817921 |
tgcaatattgcagacgaatcccatttagtatacatgtcatgcatg |
50817877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 324
Target Start/End: Original strand, 50857943 - 50857987
Alignment:
| Q |
280 |
tgcaatattgcagacaaatcccatttagtatatatgtcatacatg |
324 |
Q |
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| T |
50857943 |
tgcaatattgcagacgaatcccatttagtatacatgtcatgcatg |
50857987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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