View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12422_high_4 (Length: 334)
Name: NF12422_high_4
Description: NF12422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12422_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 2 - 330
Target Start/End: Original strand, 29736381 - 29736709
Alignment:
| Q |
2 |
atgtatagggtattcatcttcatcatccatttgaatatcgaaatctggaacatggtaattcattttgcttcgcttctgtttagttgaattgaactgaaaa |
101 |
Q |
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| T |
29736381 |
atgtatagggtattcatcttcatcatccatttgaatatcgaaatctggaacatggtaattcattttgcttcgcttctgtttagttgaattgaactgaaaa |
29736480 |
T |
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| Q |
102 |
ggaaacaaataacaagcaattaaaattaaagtatcaagtagaaatagtaattaaattctaaaaaatgaacaacttactattgaagctagttagctgatcc |
201 |
Q |
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| T |
29736481 |
ggaaacaaataacaagcaattaaaattaaagtatcaagtagaaatagtaattaaattctaaaaaatgaacaacttactattgaagctagttagctgatcc |
29736580 |
T |
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| Q |
202 |
agaacatagtgagcaaattaaaactaagattaatttgtgtggagcttaaatttttgttgcttgatttgaatgaattgagtctatatcttaatcttaatct |
301 |
Q |
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| T |
29736581 |
agaacatagtgagcaaattaaaactaagattaatttgtgtggagcttaaatttttgttgcttgatttgaatgaattgagtctatatcttaatcttaatct |
29736680 |
T |
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| Q |
302 |
tatgctatgtatattatattcttggagat |
330 |
Q |
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||||||||||||||||||| |||||||| |
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| T |
29736681 |
tatgctatgtatattatatgattggagat |
29736709 |
T |
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