View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12422_high_7 (Length: 320)
Name: NF12422_high_7
Description: NF12422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12422_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 2 - 308
Target Start/End: Original strand, 34217928 - 34218234
Alignment:
| Q |
2 |
aaattaatccttgttctggactttcattgtgtagtccttcagatgccttaactttttgtatttctgaactgctacagattttggtgtgttgattgacagt |
101 |
Q |
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| T |
34217928 |
aaattaatccttgttctcgactttcattgtgtagtccttcagatgccttaactttttgtatttctgaactgctacagattttggtgtgttgattgacagt |
34218027 |
T |
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| Q |
102 |
acttttaacctatcagaccatcatacaggcttgaacaagaagaagcttgcaggaattctagtgggctgtattgtgtttattgcgatcatactgataatat |
201 |
Q |
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| T |
34218028 |
acttttaacctatcagaccataatacaggcttgaacaagaagaagcttgcaggaattctagtgggctgtattgtgtttattgcgatcatactgataatat |
34218127 |
T |
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| Q |
202 |
tggtagtgtccatacatcgtgttcggaggaagaaactagacaagccaggttatcttttagttatttgaaactgattcaacaattgtaactacgcactctg |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34218128 |
tggtagtgtccatacatcgtgttcggaggaagaaactagacaagccaggttatcttttagttatttgaaactgattcaacaattgtaactacgcagtctg |
34218227 |
T |
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| Q |
302 |
atagaat |
308 |
Q |
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||||||| |
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| T |
34218228 |
atagaat |
34218234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 81 - 190
Target Start/End: Complemental strand, 34194018 - 34193909
Alignment:
| Q |
81 |
tttggtgtgttgattgacagtacttttaacctatcagaccatcatacaggcttgaacaagaagaagcttgcaggaattctagtgggctgtattgtgttta |
180 |
Q |
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||||||||||| | | ||| | ||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| |||||| |
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| T |
34194018 |
tttggtgtgttaactaacacttcttttaatctatcagaccatagcacaggcttgaacaagaagaaacttgcaggaattctagtaggctgtattttgttta |
34193919 |
T |
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| Q |
181 |
ttgcgatcat |
190 |
Q |
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|||||||||| |
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| T |
34193918 |
ttgcgatcat |
34193909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 34206804 - 34206855
Alignment:
| Q |
224 |
tcggaggaagaaactagacaagccaggttatcttttagttatttgaaactga |
275 |
Q |
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|||||||||||||| ||| |||| |||| | ||||||||||||||||||||| |
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| T |
34206804 |
tcggaggaagaaaccagagaagcgaggtaaccttttagttatttgaaactga |
34206855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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