View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12422_high_8 (Length: 312)
Name: NF12422_high_8
Description: NF12422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12422_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 25850677 - 25850379
Alignment:
| Q |
1 |
aatgtcagggtttaatttgtcatattcccttttattcatagtaggcannnnnnnatnnnnnnnntatgctattcaaatatttttgttatactct--tgtt |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||| |
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| T |
25850677 |
aatgtcagggtttaatttgtcatattcccttttattcatagtaggcattttt---ttttttcaatatgctattcaaatatttttgttatactctcttgtt |
25850581 |
T |
|
| Q |
99 |
ttgaaatatgctattcaaatttgtgttcttcatttagaaaactaaattgggtcagcatctat-catctcccacattaaatggagcattgcagcaaatgaa |
197 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
25850580 |
ttgaaatatgctattcgaatttgtgttcatcatttagaaaactaaattgggtcagcatctattcatctcccacattgaatggagcattgcagcaaatgaa |
25850481 |
T |
|
| Q |
198 |
ctactactttttaggtatatggaccattcatttgacatgatgcacaaatgaacaaagagacacgaaatctcctcatatattgaggcatgatcaatcgagt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25850480 |
ctactactttttaggtatatggaccattcatttgacatgatgcacaaatgaataaagagacacgaaatctcctcatatattgaggcatgatcaatcgagt |
25850381 |
T |
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