View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12422_low_1 (Length: 667)
Name: NF12422_low_1
Description: NF12422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12422_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 131 - 655
Target Start/End: Original strand, 41559090 - 41559616
Alignment:
| Q |
131 |
cacattgcagaccagtcagttgtggaccatgctattaatgatatatgtgtcttgatgcagtgcagccgccataacctcaatgtggtagattttctgcact |
230 |
Q |
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| T |
41559090 |
cacattgcagaccagtcagttgtggaccatgctattaatgatatatgtgtcttgatgcagtgcagccgccataacctcaatgtggtagattttctgcact |
41559189 |
T |
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| Q |
231 |
tcatcaatttatttctgtttttattttcgtttggatctcttaatttggtggattttggagaataaaagcatcaactgatttttacagtatgtttttcttg |
330 |
Q |
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| T |
41559190 |
tcatcaatttatttctgtttttattttcgtttggatctcttaatttggtggattttggtgaataaaagcatcaactgatttttacagtatgtttttcttg |
41559289 |
T |
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| Q |
331 |
ctgtatattcatttcaaatagaaagttaaccatgtttcgtcgttactttcannnnnnnnn--gtaggtttctgccgggaatgggtacgtgatgagatcac |
428 |
Q |
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| T |
41559290 |
ctgtatattcatttcaaatagaaagttaaccatgtttcgtcgttactttcatttttttttttgtaggtttctgccgggaatgggtacgtgatgagatcac |
41559389 |
T |
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| Q |
429 |
actcaatcatggaaaatgcactattttatgatgtgtacatttgcataaaacaaattatcgccactcacactgtgaatccctggccctgatgcatctaaaa |
528 |
Q |
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| T |
41559390 |
actcaatcatggaaaatgcactattttatgatgtgtacatttgcataaaacaaattatcgccactcacactgtgaatccctggccctgatgcatctaaaa |
41559489 |
T |
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| Q |
529 |
gttatgaacatcaaaggatagtacatattggttttttggaattctgagaccttctgttgttttcacaaatttcattgatatcaaaatgatgtcaatgatg |
628 |
Q |
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| T |
41559490 |
gttatgaacatcaaaggatagtacatattggttttttggaattctgagaccttctgttgttttcacaaatttcattgatatcaaaataatgtcaatgatg |
41559589 |
T |
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| Q |
629 |
aaatatgattcttcctagtctctgctt |
655 |
Q |
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| T |
41559590 |
aaatatgattcttcctagtctgtgctt |
41559616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 136 - 450
Target Start/End: Original strand, 41542951 - 41543268
Alignment:
| Q |
136 |
tgcagaccagtcagttgtggaccatgctattaatgatatatgtgtcttgatgcagtgcagccgccataacctcaatgtggtagattttctgcacttcatc |
235 |
Q |
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| T |
41542951 |
tgcagaccagtcagttgtggaccatgctattaatgatatatgtgtccggatgcagtgcagtcgccataacctcaatgtggtagattttctgcacttcatc |
41543050 |
T |
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| Q |
236 |
aatttatttctgttttta-ttttcgtttggatctcttaatttggtggattttggagaataaaagcatcaactgatttttacagtatgtttttcttgctgt |
334 |
Q |
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| T |
41543051 |
gatttatttctgtttttagttttagtttggatctcttaatccggtggattttggtgaatataaccattatctgatttttatagtatgtttctcttgctga |
41543150 |
T |
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| Q |
335 |
atattcatttcaaatagaaagttaaccatgtttcgtcgttactttc--annnnnnnnngtaggtttctgccgggaatgggtacgtgatgagatcacactc |
432 |
Q |
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| T |
41543151 |
atattcatttcaaataggaagttaaccatgtttcgtcgttattttccttttactttttgtaggtttctgccgggaatgggtacttgatgagatcacactc |
41543250 |
T |
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| Q |
433 |
aatcatggaaaatgcact |
450 |
Q |
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| T |
41543251 |
aatcatggaatatgcact |
41543268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 41558982 - 41559063
Alignment:
| Q |
23 |
atgactgctatattgctaattcttaaaatatttatttgtagggtaaaggtctatctccccacccttgacatatactgacttc |
104 |
Q |
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| T |
41558982 |
atgactgctatattgctaattcttaaaatatttatttgtagggtaaaggtctatctccccacccttgacatatactgacttc |
41559063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 448 - 537
Target Start/End: Original strand, 41543327 - 41543416
Alignment:
| Q |
448 |
actattttatgatgtgtacatttgcataaaacaaattatcgccactcacactgtgaatccctggccctgatgcatctaaaagttatgaac |
537 |
Q |
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| T |
41543327 |
actattttatgatgtgtacatttgtataaaacaaattatcgccagtgatgctgcaaatccctggccctgatgcatctaagagttctgaac |
41543416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 570 - 639
Target Start/End: Original strand, 41543417 - 41543486
Alignment:
| Q |
570 |
ttctgagaccttctgttgttttcacaaatttcattgatatcaaaatgatgtcaatgatgaaatatgattc |
639 |
Q |
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| T |
41543417 |
ttctgagaccttctgttgttttcacaaacttcattgatatcataatgatgtcagtgataaaatatgattc |
41543486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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