View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12423_high_10 (Length: 300)
Name: NF12423_high_10
Description: NF12423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12423_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 3 - 289
Target Start/End: Complemental strand, 41094911 - 41094625
Alignment:
| Q |
3 |
tcatgcatgcatcctctgagctatctcatctcatgtttgcaccatctcctaagaatatctatgcaatttgacaaattcctaaacaacagtagatatttgg |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41094911 |
tcatgcatgcatcctctgagctatctcatctcatgtttgcaccatctcctaagaatatctatgcaatttgacaaattcctaaacaacagtagatatttgg |
41094812 |
T |
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| Q |
103 |
catatggaagatttgtggatcttgtctaccaaaatggtacacggtggagcatgtatgccctagtagagaagtcaaacagctaatcatgacgataactctc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41094811 |
catatggaagatttgtggatcttgtctaccaaaatggtacacggtggagcatgtatgccctagtagagaagtcaaacagctaatcatgacgataactctc |
41094712 |
T |
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| Q |
203 |
aaataaaatcccaaagccactctaccctaaaaagagcacatacggccttcccctccattctcctagattcctcaatattcaccctat |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41094711 |
aaataaaatcccaaagccactctaccctaaaaagagcacatacggccttcccctccattctcctagattcctcaatactcaccctat |
41094625 |
T |
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