View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12423_high_2 (Length: 420)
Name: NF12423_high_2
Description: NF12423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12423_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 30 - 399
Target Start/End: Original strand, 39082466 - 39082835
Alignment:
| Q |
30 |
ataacaaagttatgctctttggtcatagtgattcctatgaaggggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttggggg |
129 |
Q |
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| T |
39082466 |
ataacaaagttatgctctttggtcatagtgattcctatgaaggggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttggggg |
39082565 |
T |
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| Q |
130 |
aagaatgccaaggttcgtaaattagttaatttttctctgccacaataattaagccctacttgccatttgttatatatttttactctttatttcgagagat |
229 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39082566 |
aagaatgccaaggtttgtaaattagttaatttttctctgccacaataattaagccctacttgccatttgttatatatttttactctttattttgagagat |
39082665 |
T |
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| Q |
230 |
tagtcctaacagtttgaatatttttctacacaaatgttgcaggtgcaggttcggatactttcacgtggtcaacaatgattatacacattggcaacaatat |
329 |
Q |
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| T |
39082666 |
tagtcctaacagtttgaatatttttctacacaaatgttgcaggtgcaggttcggatactttcatgtggtcaacaatgattatacacattggcaacaatat |
39082765 |
T |
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| Q |
330 |
gcaatcggtggaagttcgtccccaactattttcagtcaaggcaatagatttctagctccagatgatgatg |
399 |
Q |
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| T |
39082766 |
gcaattggtggaagttcgtccccaactatttttagtcaaggcaatagatttctagctccagatgatgatg |
39082835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 30 - 399
Target Start/End: Original strand, 31727103 - 31727458
Alignment:
| Q |
30 |
ataacaaagttatgctctttggtcatagtgattcctatgaaggggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttggggg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31727103 |
ataacaaagttatgctctttggtcatagtgattcctatgaagaggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttggggg |
31727202 |
T |
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| Q |
130 |
aagaatgccaaggttcgtaaattagttaatttttctctgccacaataattaagccctacttgccatttgttatatatttttactctttatttcgagagat |
229 |
Q |
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|||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
31727203 |
aagaatgccaaggtaggtttattagttaatttttctctgccacagtaattaagccctacttgccatttgttatatatttttactc--------------t |
31727288 |
T |
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| Q |
230 |
tagtcctaacagtttgaatatttttctacacaaatgttgcaggtgcaggttcggatactttcacgtggtcaacaatgattatacacattggcaacaatat |
329 |
Q |
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|| ||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| |
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| T |
31727289 |
tattcctaacagtttgaaattttttctacacgaatgttgcagatgcaggttcggatactttcatgtggtgaacaatgattacacacattggcaacaatat |
31727388 |
T |
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| Q |
330 |
gcaatcggtggaagttcgtccccaactattttcagtcaaggcaatagatttctagctccagatgatgatg |
399 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31727389 |
gcaatcggtggaagttcgtcccgaactatttttagtcaaggcaatagatttctagctccagatgatgatg |
31727458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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