View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12423_high_3 (Length: 416)

Name: NF12423_high_3
Description: NF12423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12423_high_3
NF12423_high_3
[»] chr8 (2 HSPs)
chr8 (16-189)||(12933811-12933984)
chr8 (39-76)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (16-189)||(28608621-28608794)
chr4 (16-166)||(14177081-14177231)
chr4 (24-77)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (9-46)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (9-46)||(796698-796735)
chr6 (9-46)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (9-46)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 12933811 - 12933984
Alignment:
Q  16 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 114  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||| || || || ||||| | ||| |||| |    
T  12933811 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt 12933909  T
Q  115 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga 189  Q
    |||||||||| |||||  | |||||||| || || |||||||| || ||||| | ||| ||||| || |||||||    
T  12933910 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga 12933984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
Q  39 catggagatttggaagaggagatttatatggagcaacc 76  Q
    ||||| || |||||||||||||||||||||||||||||    
T  36999937 catggtgacttggaagaggagatttatatggagcaacc 36999974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 28608794 - 28608621
Alignment:
Q  16 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 114  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  ||||||||||||||| ||| || || ||||| | ||| |||| |    
T  28608794 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt-aagaagactcgaaaggagcacttggttt 28608696  T
Q  115 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga 189  Q
    |||||||||| |||||  | |||||||| || || |||||||| || ||||| | ||| ||||| || |||||||    
T  28608695 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga 28608621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 14177081 - 14177231
Alignment:
Q  16 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 114  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||| || || || ||||| | ||| |||| |    
T  14177081 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt 14177179  T
Q  115 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggta 166  Q
    |||||||||| |||||  | |||||||| || || |||||||| || |||||    
T  14177180 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggta 14177231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
Q  24 aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca 77  Q
    |||| ||||||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  20706182 aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca 20706234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 6692086 - 6692123
Alignment:
Q  9 gagcagttggatgtgaaaactgcatttcttcatggaga 46  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  6692086 gagcagttagatgtgaagactgcatttcttcatggaga 6692123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 796735 - 796698
Alignment:
Q  9 gagcagttggatgtgaaaactgcatttcttcatggaga 46  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  796735 gagcagttagatgtgaagactgcatttcttcatggaga 796698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 8273092 - 8273129
Alignment:
Q  9 gagcagttggatgtgaaaactgcatttcttcatggaga 46  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  8273092 gagcagttagatgtgaagactgcatttcttcatggaga 8273129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 19944036 - 19944073
Alignment:
Q  9 gagcagttggatgtgaaaactgcatttcttcatggaga 46  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  19944036 gagcagttagatgtgaagactgcatttcttcatggaga 19944073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University