View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12424_low_1 (Length: 894)
Name: NF12424_low_1
Description: NF12424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12424_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 820; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 820; E-Value: 0
Query Start/End: Original strand, 11 - 879
Target Start/End: Original strand, 40653264 - 40654132
Alignment:
| Q |
11 |
gaacctgtggagaagatccactctccaattcgtatgcttgctcagccaattcattacccaacttgaagaaaggaaaacaatgactgcatatatctcaaga |
110 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40653264 |
gaacctgtagagaagatccactctccgattcgtatgcttgctcagccaattcattacccaacttgaagaaagtaaaacaatgactgcatatatctcaaga |
40653363 |
T |
|
| Q |
111 |
agaatagccccgacgaaaagcacaaaagtgataaccaggtcataatacctgtgtttgtatccttcatcatcaagttcatatgcattatgtttatgtagaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40653364 |
agaatagccccgacgaaaagcacaaaagtgataaccaggtcataatacctgtgtttgtatccttcatcatcaagttcatatacattatgtttatgtagaa |
40653463 |
T |
|
| Q |
211 |
aacaaaatgcgattaatgcagagagtgtacagaaaaagctcacagatttcaggaagatgccgcggtaggaatatgttatcactgcctttgtatataaaat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40653464 |
aacaaaatgcgattaatgcagagagtgtacagaaaaagctcacagatttcaggaagatgccgcggtaggaatatgttatcactgcctttgtatataaaat |
40653563 |
T |
|
| Q |
311 |
atcatatattaatcctagctcaacctcaattgctttaaaagcatctttccagttagaaacttgnnnnnnntattggctgcttttgtggtcttgaaaactg |
410 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
40653564 |
atcatatattaatcctagctcaacctcaattgctttaaaagcatctttccagttagaatcttgaaaaaaatattggctgcttttgtggtcttgaaaactg |
40653663 |
T |
|
| Q |
411 |
aagatgagatctgcaaataggcactcaggaatgttgtagaatttgaatccatcacgtaaagcttgacaatctggaatttttgtatttggtattttggttc |
510 |
Q |
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| T |
40653664 |
aagatgagatctgcaaataggcactcaggaatgttgtagaatttgaatccatcacgtaaagcttgacaatctggaatttttgtatttggtattttggttc |
40653763 |
T |
|
| Q |
511 |
ccccttgagaattaggatccaatactaagggagtagtttcattaatttcatctaaggtaacatgatatccttcttcttttttagcagtgtaatcatccat |
610 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40653764 |
ccccttgagaattaggatccaatactaagggagtagtttcattaatttcatctaaggtaacatgatacccttcttcttttttagcagtgtaatcatccat |
40653863 |
T |
|
| Q |
611 |
gaatttagcatagtttggtcctgggtctggaggagggagaattgattctctgaatccatcgctgcttccggaccgcagtgaccaagtcctctcaccatat |
710 |
Q |
| |
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| T |
40653864 |
gaatttagcatagtttggtcctgggtctggaggagggagaattgattctctgaatccatcgctgcttccggaccgcagtgaccaagtcctctcaccatat |
40653963 |
T |
|
| Q |
711 |
ttgattattcctgccacgacaataggaacggtgacatacttaaggggattggtgttccatgaccgataaacaacataaactgcaactgctaattggtaga |
810 |
Q |
| |
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| T |
40653964 |
ttgattattcctgccatgacaataggaacggtgacatacttaaggggattggtgttccatgaccgataaacaacataaactgcaactgctaattggtaga |
40654063 |
T |
|
| Q |
811 |
gtaattcaagcatatgtcgtggccacagttggttgtcttcaagagagtaggcagtgattgtgtcaggac |
879 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40654064 |
gtaattcaagcatatgtcgtggccacagttggttgtcttcaagagagtaggcagtgattgtgtcaggac |
40654132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 227 - 879
Target Start/End: Original strand, 40644798 - 40645450
Alignment:
| Q |
227 |
tgcagagagtgtacagaaaaagctcacagatttcaggaagatgccgcggtaggaatatgttatcactgcctttgtatataaaatatcatatattaatcct |
326 |
Q |
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|||| |||| ||||||||||||||||||||||| |||||||| ||||| | ||| ||||||| ||||||||||||||||| |||||||| | |||||| |
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| T |
40644798 |
tgcaaagagcgtacagaaaaagctcacagatttaaggaagattccgcgtttggagtatgttaacactgcctttgtatatagcatatcatacaccaatcct |
40644897 |
T |
|
| Q |
327 |
agctcaacctcaattgctttaaaagcatctttccagttagaaacttgnnnnnnntattggctgcttttgtggtcttgaaaactgaagatgagatctgcaa |
426 |
Q |
| |
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|||||||| ||||| ||| |||||||| || ||| | || |||||||| ||||||||||||||||||| | |||||||||||||| |
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| T |
40644898 |
agctcaactgcaattacttcaaaagcatgttcccaatccatgttctgaaaaaataattggctggttttgtggtcttgaaaactaaggatgagatctgcaa |
40644997 |
T |
|
| Q |
427 |
ataggcactcaggaatgttgtagaatttgaatccatcacgtaaagcttgacaatctggaatttttgtatttggtattttggttcccccttgagaattagg |
526 |
Q |
| |
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|||||||||||||||| ||||||||||| |||||||| |||||||| | || |||||| |||| |||||| ||||||||| |||||||| ||||| | |
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| T |
40644998 |
ataggcactcaggaattttgtagaattttaatccatcgtgtaaagctcgcgcatgtggaatatttggatttggaattttggtttccccttgataattatg |
40645097 |
T |
|
| Q |
527 |
atccaatactaagggagtagtttcattaatttcatctaaggtaacatgatatccttcttcttttttagcagtgtaatcatccatgaatttagcatagttt |
626 |
Q |
| |
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||||||| | ||||||||||||||| || ||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||| || ||||| ||| |
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|
| T |
40645098 |
ttccaataatgagggagtagtttcatcaacttcttctaatgtaacatgatatccttcatcttttttagcagtgtaatcgtccatgaacttggcataattt |
40645197 |
T |
|
| Q |
627 |
ggtcctgggtctggaggagggagaattgattctctgaatccatcgctgcttccggaccgcagtgaccaagtcctctcaccatatttgattattcctgcca |
726 |
Q |
| |
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||||||||||| |||||||| ||||| ||||| |||||||| | ||||||||| |||| || |||||| |||| ||||||||||||| |||||| |||| |
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| T |
40645198 |
ggtcctgggtccggaggaggtagaatggattccctgaatcctttgctgcttccagaccacaaagaccaactcctttcaccatatttgactattccggcca |
40645297 |
T |
|
| Q |
727 |
cgacaataggaacggtgacatacttaaggggattggtgttccatgaccgataaacaacataaactgcaactgctaattggtagagtaattcaagcatatg |
826 |
Q |
| |
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| | ||| |||| | ||||||| |||||||| | |||||||||||| |||||||||||||||||||||| || ||| ||||||| |||||||||| |
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| T |
40645298 |
caaaaattggaatgttgacataattaagggggcttccgttccatgaccggtaaacaacataaactgcaactgttagctgggagagtaacacaagcatatg |
40645397 |
T |
|
| Q |
827 |
tcgtggccacagttggttgtcttcaagagagtaggcagtgattgtgtcaggac |
879 |
Q |
| |
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||| ||| || | ||||| |||||||||||||| || ||||||||||||| |
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| T |
40645398 |
tcgataccaaagctcattgtcctcaagagagtaggcggtaattgtgtcaggac |
40645450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 40644642 - 40644701
Alignment:
| Q |
62 |
cattacccaacttgaagaaaggaaaacaatgactgcatatatctcaagaagaatagcccc |
121 |
Q |
| |
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|||| ||| |||||||||||| ||||||||||||||||||||||| | || ||||||||| |
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| T |
40644642 |
cattgcccgacttgaagaaagtaaaacaatgactgcatatatctccaaaataatagcccc |
40644701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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