View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12424_low_3 (Length: 542)
Name: NF12424_low_3
Description: NF12424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12424_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 36 - 523
Target Start/End: Original strand, 7653796 - 7654283
Alignment:
| Q |
36 |
cttatttttgattataaattcaaggggtaagataactcactaaaacatatcttaaccatgaaggatcaagtctagtggaaggggttagatcctaaaatgt |
135 |
Q |
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| T |
7653796 |
cttatttttgattaaaaattcaaggggtaagataactcactaaaacatatcttaaccatgaaggatcaagtctagtggaaggggttagatcctaaaatgt |
7653895 |
T |
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| Q |
136 |
gacaaattaaggttcaaaccccacttggaggtggtgctcaataatatctcgaataggattacttcttgtgcaagaaacatattagaaaccnnnnnnnnnn |
235 |
Q |
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| T |
7653896 |
gacaaattaaggttcaaaccccacttggaggtggtgctcaataatatctcgaataggattacttcttgtgcaagaaacatattagaaaccaaaaagtaaa |
7653995 |
T |
|
| Q |
236 |
nnnnnnnnccatcttgtgcaagaaacccacttgaaggatactattgatacattgatgattaatatgaaagtatatgtggctagcaatcatgatttacttt |
335 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7653996 |
aaagaaaaccatcttgtgcaagaaacccacttgaaggatattattgatacattgatgattaatatgaaagtatatgtgattagcaatcatgatttacttt |
7654095 |
T |
|
| Q |
336 |
tctaacactcgtatacaaaatgtctccttactcatgtcacaacacaatttataatatatatcacactcattccattgcatcgccactatattattttgaa |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7654096 |
tctaacactcgtatacaaaatgtctccttactcatgtcacaacacaatttataatatatatcacactcattccattgcatcgccactatattattttgaa |
7654195 |
T |
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| Q |
436 |
actaaaatgcattaaaaataaacttggtcagttctgtttgtcctcaaatgttaaggctacccgttactttcggtgaaaatattacact |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7654196 |
actaaaatgcattaaaaataaacttggtcagttctgtttgtcctcaaatgttaaggctacccgttactttcggtgaaaatattacact |
7654283 |
T |
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