View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12424_low_4 (Length: 466)
Name: NF12424_low_4
Description: NF12424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12424_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 13 - 448
Target Start/End: Complemental strand, 1481808 - 1481373
Alignment:
| Q |
13 |
acctgtgaaaacgccttgtatgctatcgagtataacagatatagaaaccagaagagccaagacagtaacgtatttaacaacctccgtatcactacttaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1481808 |
acctgtgaaaacgccttgtatgctatcgagtataacagatatagaaaccagaagagccaagacagtaacgtatttaacaacctccgtatcactactgaaa |
1481709 |
T |
|
| Q |
113 |
atgtagccataaacatggcagcatgcaaagagggttgcgctcactatacttgtttcagtgagtgcaagtgacatagcaactaacacggcaacacgtgctt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1481708 |
atgtagccataaacatggcagcatgcaaagagggttgcgctcactatacttgtttcagtgagtgcaagtgacatagcaactaacacggcaacacgtgctt |
1481609 |
T |
|
| Q |
213 |
caaatggattaccagctcctaattcatttgaaacccttgtgctataaaccaatcaattactaagatttgacccgtgcgacgcgggtctatttgaaaatca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1481608 |
caaatggattaccagctcctaattcatttgaaacccttgtgctataaaccaatcaattactaagatttgacccgtgcgacgcgggtctatttgaaaatca |
1481509 |
T |
|
| Q |
313 |
caaacaaacttaataagtatagaatattatgattaaaattatcctaatatgcatccaacaacatttaaaaacaaaaagaatagatgatatagttacatga |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1481508 |
caaacaaacttaataagtatagaatattatgattaaaattatcctaatatgcatccaacaacatttaaaaacaaaaagaatagatgatattgttacatga |
1481409 |
T |
|
| Q |
413 |
ttaccatttcttttctatttttgctaatacatgttt |
448 |
Q |
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| T |
1481408 |
ttaccatttcttttctttttttgctaatacatgttt |
1481373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 259
Target Start/End: Complemental strand, 49191138 - 49190892
Alignment:
| Q |
13 |
acctgtgaaaacgccttgtatgctatcgagtataacagatatagaaaccagaagagccaagacagtaacgtatttaacaacctccgtatcactacttaaa |
112 |
Q |
| |
|
||||| || ||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| || ||||||||||| ||| |
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| T |
49191138 |
acctgcgagaacgccttgtatgctgtcgagtataacggatatagaaaccagaggagccaagacagtgacgtatttaacaacttctgtatcactactgaaa |
49191039 |
T |
|
| Q |
113 |
atgtagccataaacatggcagcatgcaaagagggttgcgctcactatacttgtttcagtgagtgcaagtgacatagcaactaacacggcaacacgtgctt |
212 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
49191038 |
atgtagccataaacatggcggcatgcaaagagggttgcgctcactatacttgcttcagtgagtccaagtgacatagcagctaacacggcaacacgtgctt |
49190939 |
T |
|
| Q |
213 |
caaatggattaccagctcctaattcatttgaaacccttgtgctataa |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49190938 |
caaatggattaccagctcctaattcatttgaaacccttgtgctataa |
49190892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 306 - 394
Target Start/End: Original strand, 1850550 - 1850638
Alignment:
| Q |
306 |
aaaatcacaaacaaacttaataagtatagaatattatgattaaaattatcctaatatgcatccaacaacatttaaaaacaaaaagaata |
394 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| ||||||||||||||| |||||||||| |
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| T |
1850550 |
aaaatcacaaacaaacttaataagtatacaatattattattaaaattatcttaatatgcattcaacaacatttaaaataaaaaagaata |
1850638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 246
Target Start/End: Original strand, 30475857 - 30475886
Alignment:
| Q |
217 |
tggattaccagctcctaattcatttgaaac |
246 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
30475857 |
tggattaccagctcctaattcatttgaaac |
30475886 |
T |
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